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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-50022699-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=50022699&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 50022699,
"ref": "C",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000316763.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "NM_016440.4",
"protein_id": "NP_057524.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 474,
"cds_start": -4,
"cds_end": null,
"cds_length": 1425,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1923,
"mane_select": "ENST00000316763.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "ENST00000316763.8",
"protein_id": "ENSP00000324636.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 474,
"cds_start": -4,
"cds_end": null,
"cds_length": 1425,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1923,
"mane_select": "NM_016440.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "ENST00000599538.5",
"protein_id": "ENSP00000469880.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 474,
"cds_start": -4,
"cds_end": null,
"cds_length": 1425,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2126,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "ENST00000594092.5",
"protein_id": "ENSP00000472541.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 412,
"cds_start": -4,
"cds_end": null,
"cds_length": 1239,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1831,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "ENST00000593919.5",
"protein_id": "ENSP00000469710.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 406,
"cds_start": -4,
"cds_end": null,
"cds_length": 1221,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1979,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "n.-64-2052G>C",
"hgvs_p": null,
"transcript": "ENST00000594090.5",
"protein_id": "ENSP00000469325.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1448,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "ENST00000594948.5",
"protein_id": "ENSP00000473171.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 474,
"cds_start": -4,
"cds_end": null,
"cds_length": 1425,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1847,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "NM_001025778.2",
"protein_id": "NP_001020949.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 424,
"cds_start": -4,
"cds_end": null,
"cds_length": 1275,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1773,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "ENST00000377011.6",
"protein_id": "ENSP00000366210.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 424,
"cds_start": -4,
"cds_end": null,
"cds_length": 1275,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1749,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "ENST00000601341.5",
"protein_id": "ENSP00000470156.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 424,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 1,
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"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "NM_001308420.3",
"protein_id": "NP_001295349.1",
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"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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},
{
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"canonical": false,
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"strand": false,
"consequences": [
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],
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"gene_symbol": "VRK3",
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"hgvs_c": "c.-64-2052G>C",
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"transcript": "ENST00000597215.5",
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},
{
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"strand": false,
"consequences": [
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],
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"exon_count": 6,
"intron_rank": 1,
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"gene_symbol": "VRK3",
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"hgvs_c": "c.-64-2052G>C",
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"transcript": "ENST00000600137.5",
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},
{
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"strand": false,
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],
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"gene_symbol": "VRK3",
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"hgvs_c": "c.-64-2052G>C",
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"transcript": "ENST00000596445.5",
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},
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],
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},
{
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"strand": false,
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],
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"intron_rank": 1,
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"gene_symbol": "VRK3",
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},
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],
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},
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],
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"gene_symbol": "VRK3",
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"hgvs_c": "n.-64-2052G>C",
"hgvs_p": null,
"transcript": "ENST00000596814.5",
"protein_id": "ENSP00000472217.1",
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},
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"strand": false,
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "VRK3",
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"hgvs_c": "n.95-2052G>C",
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},
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],
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],
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"intron_rank": 1,
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},
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"consequences": [
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],
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"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
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"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "XM_006723237.4",
"protein_id": "XP_006723300.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 13,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "VRK3",
"gene_hgnc_id": 18996,
"hgvs_c": "c.-64-2052G>C",
"hgvs_p": null,
"transcript": "XM_047438898.1",
"protein_id": "XP_047294854.1",
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},
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