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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-52637196-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=52637196&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 52637196,
"ref": "C",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000301096.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZNF83",
"gene_hgnc_id": 13158,
"hgvs_c": "c.-322+1116G>T",
"hgvs_p": null,
"transcript": "ENST00000301096.8",
"protein_id": "ENSP00000301096.3",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 516,
"cds_start": -4,
"cds_end": null,
"cds_length": 1551,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2553,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": null,
"protein_coding": null,
"strand": true,
"consequences": [
"intragenic_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": null,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LOC124904757",
"gene_hgnc_id": null,
"hgvs_c": "n.52637196C>A",
"hgvs_p": null,
"transcript": null,
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZNF83",
"gene_hgnc_id": 13158,
"hgvs_c": "c.-663+1116G>T",
"hgvs_p": null,
"transcript": "NM_001105549.2",
"protein_id": "NP_001099019.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 516,
"cds_start": -4,
"cds_end": null,
"cds_length": 1551,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2894,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZNF83",
"gene_hgnc_id": 13158,
"hgvs_c": "c.-547+1116G>T",
"hgvs_p": null,
"transcript": "NM_001105550.2",
"protein_id": "NP_001099020.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 516,
"cds_start": -4,
"cds_end": null,
"cds_length": 1551,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2778,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZNF83",
"gene_hgnc_id": 13158,
"hgvs_c": "c.-573+1116G>T",
"hgvs_p": null,
"transcript": "NM_001105551.2",
"protein_id": "NP_001099021.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 516,
"cds_start": -4,
"cds_end": null,
"cds_length": 1551,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2804,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZNF83",
"gene_hgnc_id": 13158,
"hgvs_c": "c.-449+1116G>T",
"hgvs_p": null,
"transcript": "NM_001105552.2",
"protein_id": "NP_001099022.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 516,
"cds_start": -4,
"cds_end": null,
"cds_length": 1551,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2680,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ZNF83",
"gene_hgnc_id": 13158,
"hgvs_c": "c.-448-2043G>T",
"hgvs_p": null,
"transcript": "NM_001277945.2",
"protein_id": "NP_001264874.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 516,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 2899,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ZNF83",
"gene_hgnc_id": 13158,
"hgvs_c": "c.-234+18365G>T",
"hgvs_p": null,
"transcript": "NM_001277946.2",
"protein_id": "NP_001264875.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 516,
"cds_start": -4,
"cds_end": null,
"cds_length": 1551,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2684,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNF83",
"gene_hgnc_id": 13158,
"hgvs_c": "c.-321-2043G>T",
"hgvs_p": null,
"transcript": "NM_001277947.2",
"protein_id": "NP_001264876.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 516,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 2844,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 5,
"intron_rank": 2,
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"gene_symbol": "ZNF83",
"gene_hgnc_id": 13158,
"hgvs_c": "c.-448-2043G>T",
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"transcript": "NM_001277948.2",
"protein_id": "NP_001264877.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 5,
"intron_rank": 3,
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"gene_symbol": "ZNF83",
"gene_hgnc_id": 13158,
"hgvs_c": "c.-360-18134G>T",
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"transcript": "NM_001277949.2",
"protein_id": "NP_001264878.1",
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},
{
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"consequences": [
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],
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"gene_symbol": "ZNF83",
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},
{
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],
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"gene_symbol": "ZNF83",
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},
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],
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},
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],
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},
{
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],
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"gene_symbol": "ZNF83",
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},
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],
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},
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],
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"gene_symbol": "ZNF83",
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"hgvs_c": "c.-448-2043G>T",
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"transcript": "NM_001348019.2",
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},
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],
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"gene_symbol": "ZNF83",
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"hgvs_c": "c.-322+1116G>T",
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"transcript": "NM_018300.4",
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],
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],
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},
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],
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"gene_symbol": "ZNF83",
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"transcript": "ENST00000597161.7",
"protein_id": "ENSP00000473096.2",
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},
{
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"consequences": [
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],
"exon_rank": null,
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"exon_count": 5,
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"gene_symbol": "ZNF83",
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"hgvs_c": "c.-547+1116G>T",
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"transcript": "ENST00000706199.2",
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},
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