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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-7647164-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=7647164&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 7647164,
"ref": "C",
"alt": "T",
"effect": "splice_region_variant,synonymous_variant",
"transcript": "ENST00000221283.10",
"consequences": [
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "c.1455C>T",
"hgvs_p": "p.Asp485Asp",
"transcript": "NM_006949.4",
"protein_id": "NP_008880.2",
"transcript_support_level": null,
"aa_start": 485,
"aa_end": null,
"aa_length": 593,
"cds_start": 1455,
"cds_end": null,
"cds_length": 1782,
"cdna_start": 1495,
"cdna_end": null,
"cdna_length": 1885,
"mane_select": "ENST00000221283.10",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "c.1455C>T",
"hgvs_p": "p.Asp485Asp",
"transcript": "ENST00000221283.10",
"protein_id": "ENSP00000221283.4",
"transcript_support_level": 1,
"aa_start": 485,
"aa_end": null,
"aa_length": 593,
"cds_start": 1455,
"cds_end": null,
"cds_length": 1782,
"cdna_start": 1495,
"cdna_end": null,
"cdna_length": 1885,
"mane_select": "NM_006949.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "c.1446C>T",
"hgvs_p": "p.Asp482Asp",
"transcript": "ENST00000414284.6",
"protein_id": "ENSP00000409471.1",
"transcript_support_level": 1,
"aa_start": 482,
"aa_end": null,
"aa_length": 590,
"cds_start": 1446,
"cds_end": null,
"cds_length": 1773,
"cdna_start": 1469,
"cdna_end": null,
"cdna_length": 1859,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "n.*203C>T",
"hgvs_p": null,
"transcript": "ENST00000597068.5",
"protein_id": "ENSP00000471327.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1785,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000268400",
"gene_hgnc_id": null,
"hgvs_c": "n.*1558C>T",
"hgvs_p": null,
"transcript": "ENST00000698368.1",
"protein_id": "ENSP00000513686.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1975,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "n.*203C>T",
"hgvs_p": null,
"transcript": "ENST00000597068.5",
"protein_id": "ENSP00000471327.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1785,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000268400",
"gene_hgnc_id": null,
"hgvs_c": "n.*1558C>T",
"hgvs_p": null,
"transcript": "ENST00000698368.1",
"protein_id": "ENSP00000513686.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1975,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "c.1488C>T",
"hgvs_p": "p.Asp496Asp",
"transcript": "NM_001272034.2",
"protein_id": "NP_001258963.1",
"transcript_support_level": null,
"aa_start": 496,
"aa_end": null,
"aa_length": 604,
"cds_start": 1488,
"cds_end": null,
"cds_length": 1815,
"cdna_start": 1528,
"cdna_end": null,
"cdna_length": 1918,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "c.1488C>T",
"hgvs_p": "p.Asp496Asp",
"transcript": "ENST00000441779.6",
"protein_id": "ENSP00000413606.2",
"transcript_support_level": 2,
"aa_start": 496,
"aa_end": null,
"aa_length": 604,
"cds_start": 1488,
"cds_end": null,
"cds_length": 1815,
"cdna_start": 1525,
"cdna_end": null,
"cdna_length": 1914,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "c.1446C>T",
"hgvs_p": "p.Asp482Asp",
"transcript": "NM_001127396.3",
"protein_id": "NP_001120868.1",
"transcript_support_level": null,
"aa_start": 482,
"aa_end": null,
"aa_length": 590,
"cds_start": 1446,
"cds_end": null,
"cds_length": 1773,
"cdna_start": 1486,
"cdna_end": null,
"cdna_length": 1876,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "c.1359C>T",
"hgvs_p": "p.Asp453Asp",
"transcript": "NM_001414484.1",
"protein_id": "NP_001401413.1",
"transcript_support_level": null,
"aa_start": 453,
"aa_end": null,
"aa_length": 561,
"cds_start": 1359,
"cds_end": null,
"cds_length": 1686,
"cdna_start": 1597,
"cdna_end": null,
"cdna_length": 1987,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "c.1455C>T",
"hgvs_p": "p.Asp485Asp",
"transcript": "ENST00000600702.6",
"protein_id": "ENSP00000471737.2",
"transcript_support_level": 2,
"aa_start": 485,
"aa_end": null,
"aa_length": 525,
"cds_start": 1455,
"cds_end": null,
"cds_length": 1578,
"cdna_start": 1475,
"cdna_end": null,
"cdna_length": 1707,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "c.60C>T",
"hgvs_p": "p.Asp20Asp",
"transcript": "ENST00000602355.1",
"protein_id": "ENSP00000473406.1",
"transcript_support_level": 2,
"aa_start": 20,
"aa_end": null,
"aa_length": 128,
"cds_start": 60,
"cds_end": null,
"cds_length": 387,
"cdna_start": 389,
"cdna_end": null,
"cdna_length": 716,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "n.1266C>T",
"hgvs_p": null,
"transcript": "ENST00000595800.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1974,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000268400",
"gene_hgnc_id": null,
"hgvs_c": "n.*1409C>T",
"hgvs_p": null,
"transcript": "ENST00000595866.2",
"protein_id": "ENSP00000469553.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1782,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "n.110C>T",
"hgvs_p": null,
"transcript": "ENST00000599278.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 295,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "n.*8C>T",
"hgvs_p": null,
"transcript": "ENST00000599400.1",
"protein_id": "ENSP00000473040.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 811,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "n.*646C>T",
"hgvs_p": null,
"transcript": "ENST00000599737.5",
"protein_id": "ENSP00000471585.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1523,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "n.210C>T",
"hgvs_p": null,
"transcript": "ENST00000601061.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 706,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "n.2605C>T",
"hgvs_p": null,
"transcript": "ENST00000698369.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2812,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "n.*362C>T",
"hgvs_p": null,
"transcript": "ENST00000698371.1",
"protein_id": "ENSP00000513688.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1160,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "n.1470C>T",
"hgvs_p": null,
"transcript": "NR_073560.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1860,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 20,
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"gene_symbol": "ENSG00000268400",
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"hgvs_c": "n.*1409C>T",
"hgvs_p": null,
"transcript": "ENST00000595866.2",
"protein_id": "ENSP00000469553.2",
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"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 1782,
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"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
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"exon_rank": 5,
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"exon_count": 7,
"intron_rank": null,
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"gene_symbol": "STXBP2",
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"hgvs_c": "n.*8C>T",
"hgvs_p": null,
"transcript": "ENST00000599400.1",
"protein_id": "ENSP00000473040.1",
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"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
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"exon_count": 16,
"intron_rank": null,
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"gene_symbol": "STXBP2",
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"hgvs_c": "n.*646C>T",
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"transcript": "ENST00000599737.5",
"protein_id": "ENSP00000471585.1",
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"aa_end": null,
"aa_length": null,
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"cds_end": null,
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"cdna_length": 1523,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 11,
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"exon_count": 11,
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"intron_rank_end": null,
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"hgvs_c": "n.*362C>T",
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"transcript": "ENST00000698371.1",
"protein_id": "ENSP00000513688.1",
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"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1160,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "STXBP2",
"gene_hgnc_id": 11445,
"dbsnp": "rs146425381",
"frequency_reference_population": 0.0015474248,
"hom_count_reference_population": 5,
"allele_count_reference_population": 2494,
"gnomad_exomes_af": 0.00156437,
"gnomad_genomes_af": 0.0013851,
"gnomad_exomes_ac": 2283,
"gnomad_genomes_ac": 211,
"gnomad_exomes_homalt": 5,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.6800000071525574,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.68,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.274,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -14,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6,BP7,BS1,BS2",
"acmg_by_gene": [
{
"score": -14,
"benign_score": 14,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6",
"BP7",
"BS1",
"BS2"
],
"verdict": "Benign",
"transcript": "ENST00000221283.10",
"gene_symbol": "STXBP2",
"hgnc_id": 11445,
"effects": [
"splice_region_variant",
"synonymous_variant"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.1455C>T",
"hgvs_p": "p.Asp485Asp"
},
{
"score": -9,
"benign_score": 9,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6",
"BS2"
],
"verdict": "Benign",
"transcript": "ENST00000698368.1",
"gene_symbol": "ENSG00000268400",
"hgnc_id": null,
"effects": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.*1558C>T",
"hgvs_p": null
}
],
"clinvar_disease": "Autoinflammatory syndrome,Familial hemophagocytic lymphohistiocytosis 5,not provided",
"clinvar_classification": "Conflicting classifications of pathogenicity",
"clinvar_review_status": "criteria provided, conflicting classifications",
"clinvar_submissions_summary": "US:2 LB:2",
"phenotype_combined": "Familial hemophagocytic lymphohistiocytosis 5|Autoinflammatory syndrome|not provided",
"pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
"custom_annotations": null
}
],
"message": null
}