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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-165898741-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=165898741&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 165898741,
"ref": "T",
"alt": "G",
"effect": "missense_variant",
"transcript": "ENST00000243344.8",
"consequences": [
{
"aa_ref": "K",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "c.2895A>C",
"hgvs_p": "p.Lys965Asn",
"transcript": "NM_024753.5",
"protein_id": "NP_079029.3",
"transcript_support_level": null,
"aa_start": 965,
"aa_end": null,
"aa_length": 1316,
"cds_start": 2895,
"cds_end": null,
"cds_length": 3951,
"cdna_start": 2966,
"cdna_end": null,
"cdna_length": 5415,
"mane_select": "ENST00000243344.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "N",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "c.2895A>C",
"hgvs_p": "p.Lys965Asn",
"transcript": "ENST00000243344.8",
"protein_id": "ENSP00000243344.7",
"transcript_support_level": 1,
"aa_start": 965,
"aa_end": null,
"aa_length": 1316,
"cds_start": 2895,
"cds_end": null,
"cds_length": 3951,
"cdna_start": 2966,
"cdna_end": null,
"cdna_length": 5415,
"mane_select": "NM_024753.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "c.2895A>C",
"hgvs_p": "p.Lys965Asn",
"transcript": "ENST00000679840.1",
"protein_id": "ENSP00000505248.1",
"transcript_support_level": null,
"aa_start": 965,
"aa_end": null,
"aa_length": 1323,
"cds_start": 2895,
"cds_end": null,
"cds_length": 3972,
"cdna_start": 3006,
"cdna_end": null,
"cdna_length": 5722,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "c.2895A>C",
"hgvs_p": "p.Lys965Asn",
"transcript": "ENST00000679799.1",
"protein_id": "ENSP00000505208.1",
"transcript_support_level": null,
"aa_start": 965,
"aa_end": null,
"aa_length": 1274,
"cds_start": 2895,
"cds_end": null,
"cds_length": 3825,
"cdna_start": 3006,
"cdna_end": null,
"cdna_length": 7544,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "c.2895A>C",
"hgvs_p": "p.Lys965Asn",
"transcript": "ENST00000680448.1",
"protein_id": "ENSP00000505921.1",
"transcript_support_level": null,
"aa_start": 965,
"aa_end": null,
"aa_length": 1056,
"cds_start": 2895,
"cds_end": null,
"cds_length": 3171,
"cdna_start": 3031,
"cdna_end": null,
"cdna_length": 5863,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "c.2895A>C",
"hgvs_p": "p.Lys965Asn",
"transcript": "ENST00000681606.1",
"protein_id": "ENSP00000505354.1",
"transcript_support_level": null,
"aa_start": 965,
"aa_end": null,
"aa_length": 1004,
"cds_start": 2895,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 3006,
"cdna_end": null,
"cdna_length": 3801,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "c.2895A>C",
"hgvs_p": "p.Lys965Asn",
"transcript": "XM_017004967.2",
"protein_id": "XP_016860456.1",
"transcript_support_level": null,
"aa_start": 965,
"aa_end": null,
"aa_length": 1314,
"cds_start": 2895,
"cds_end": null,
"cds_length": 3945,
"cdna_start": 2966,
"cdna_end": null,
"cdna_length": 7261,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "c.2241A>C",
"hgvs_p": "p.Lys747Asn",
"transcript": "XM_047445870.1",
"protein_id": "XP_047301826.1",
"transcript_support_level": null,
"aa_start": 747,
"aa_end": null,
"aa_length": 1098,
"cds_start": 2241,
"cds_end": null,
"cds_length": 3297,
"cdna_start": 6370,
"cdna_end": null,
"cdna_length": 8819,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "c.2145A>C",
"hgvs_p": "p.Lys715Asn",
"transcript": "XM_011511871.4",
"protein_id": "XP_011510173.1",
"transcript_support_level": null,
"aa_start": 715,
"aa_end": null,
"aa_length": 1066,
"cds_start": 2145,
"cds_end": null,
"cds_length": 3201,
"cdna_start": 6276,
"cdna_end": null,
"cdna_length": 8725,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "c.2895A>C",
"hgvs_p": "p.Lys965Asn",
"transcript": "XM_006712761.2",
"protein_id": "XP_006712824.1",
"transcript_support_level": null,
"aa_start": 965,
"aa_end": null,
"aa_length": 1056,
"cds_start": 2895,
"cds_end": null,
"cds_length": 3171,
"cdna_start": 2966,
"cdna_end": null,
"cdna_length": 5567,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.370A>C",
"hgvs_p": null,
"transcript": "ENST00000484129.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 484,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.2895A>C",
"hgvs_p": null,
"transcript": "ENST00000652557.1",
"protein_id": "ENSP00000498617.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
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"cdna_length": 5305,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.2895A>C",
"hgvs_p": null,
"transcript": "ENST00000679356.1",
"protein_id": "ENSP00000506245.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 8329,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.2784A>C",
"hgvs_p": null,
"transcript": "ENST00000679676.1",
"protein_id": "ENSP00000505492.1",
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"aa_start": null,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.*1937A>C",
"hgvs_p": null,
"transcript": "ENST00000679931.1",
"protein_id": "ENSP00000505632.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 4683,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.2895A>C",
"hgvs_p": null,
"transcript": "ENST00000679967.1",
"protein_id": "ENSP00000506607.1",
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.*1937A>C",
"hgvs_p": null,
"transcript": "ENST00000680327.1",
"protein_id": "ENSP00000506639.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.3006A>C",
"hgvs_p": null,
"transcript": "ENST00000680657.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.*2147A>C",
"hgvs_p": null,
"transcript": "ENST00000680690.1",
"protein_id": "ENSP00000506121.1",
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},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.2895A>C",
"hgvs_p": null,
"transcript": "ENST00000680888.1",
"protein_id": "ENSP00000506276.1",
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"cds_start": -4,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.925A>C",
"hgvs_p": null,
"transcript": "ENST00000680925.1",
"protein_id": null,
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"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.*2167A>C",
"hgvs_p": null,
"transcript": "ENST00000680947.1",
"protein_id": "ENSP00000506496.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8188,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC21B",
"gene_hgnc_id": 25660,
"hgvs_c": "n.2895A>C",
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}
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}