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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-178537611-CCAGGATGG-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=178537611&ref=CCAGGATGG&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 178537611,
"ref": "CCAGGATGG",
"alt": "C",
"effect": "frameshift_variant",
"transcript": "ENST00000589042.5",
"consequences": [
{
"aa_ref": "FHPG",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 355,
"exon_rank_end": null,
"exon_count": 363,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.99588_99595delCCATCCTG",
"hgvs_p": "p.Phe33196fs",
"transcript": "NM_001267550.2",
"protein_id": "NP_001254479.2",
"transcript_support_level": null,
"aa_start": 33196,
"aa_end": null,
"aa_length": 35991,
"cds_start": 99588,
"cds_end": null,
"cds_length": 107976,
"cdna_start": 99820,
"cdna_end": null,
"cdna_length": 109224,
"mane_select": "ENST00000589042.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "FHPG",
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 355,
"exon_rank_end": null,
"exon_count": 363,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.99588_99595delCCATCCTG",
"hgvs_p": "p.Phe33196fs",
"transcript": "ENST00000589042.5",
"protein_id": "ENSP00000467141.1",
"transcript_support_level": 5,
"aa_start": 33196,
"aa_end": null,
"aa_length": 35991,
"cds_start": 99588,
"cds_end": null,
"cds_length": 107976,
"cdna_start": 99820,
"cdna_end": null,
"cdna_length": 109224,
"mane_select": "NM_001267550.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "FHPG",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 353,
"exon_rank_end": null,
"exon_count": 361,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.99432_99439delCCATCCTG",
"hgvs_p": "p.Phe33144fs",
"transcript": "ENST00000446966.2",
"protein_id": "ENSP00000408004.2",
"transcript_support_level": 1,
"aa_start": 33144,
"aa_end": null,
"aa_length": 35939,
"cds_start": 99432,
"cds_end": null,
"cds_length": 107820,
"cdna_start": 99664,
"cdna_end": null,
"cdna_length": 109068,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "FHPG",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 353,
"exon_rank_end": null,
"exon_count": 361,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.99312_99319delCCATCCTG",
"hgvs_p": "p.Phe33104fs",
"transcript": "ENST00000436599.2",
"protein_id": "ENSP00000405517.2",
"transcript_support_level": 1,
"aa_start": 33104,
"aa_end": null,
"aa_length": 35899,
"cds_start": 99312,
"cds_end": null,
"cds_length": 107700,
"cdna_start": 99544,
"cdna_end": null,
"cdna_length": 108948,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "FHPG",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 348,
"exon_rank_end": null,
"exon_count": 356,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.99030_99037delCCATCCTG",
"hgvs_p": "p.Phe33010fs",
"transcript": "ENST00000426232.6",
"protein_id": "ENSP00000392336.2",
"transcript_support_level": 1,
"aa_start": 33010,
"aa_end": null,
"aa_length": 35805,
"cds_start": 99030,
"cds_end": null,
"cds_length": 107418,
"cdna_start": 99262,
"cdna_end": null,
"cdna_length": 108666,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTN-AS1",
"gene_hgnc_id": 44124,
"hgvs_c": "n.568_575delCAGGATGG",
"hgvs_p": null,
"transcript": "ENST00000419746.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4592,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "FHPG",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 357,
"exon_rank_end": null,
"exon_count": 365,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.99588_99595delCCATCCTG",
"hgvs_p": "p.Phe33196fs",
"transcript": "ENST00000412264.2",
"protein_id": "ENSP00000394672.2",
"transcript_support_level": 3,
"aa_start": 33196,
"aa_end": null,
"aa_length": 35991,
"cds_start": 99588,
"cds_end": null,
"cds_length": 107976,
"cdna_start": 100084,
"cdna_end": null,
"cdna_length": 109488,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "FHPG",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 354,
"exon_rank_end": null,
"exon_count": 362,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.99504_99511delCCATCCTG",
"hgvs_p": "p.Phe33168fs",
"transcript": "ENST00000425332.3",
"protein_id": "ENSP00000396805.3",
"transcript_support_level": 5,
"aa_start": 33168,
"aa_end": null,
"aa_length": 35963,
"cds_start": 99504,
"cds_end": null,
"cds_length": 107892,
"cdna_start": 99736,
"cdna_end": null,
"cdna_length": 109140,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "FHPG",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 352,
"exon_rank_end": null,
"exon_count": 360,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.99174_99181delCCATCCTG",
"hgvs_p": "p.Phe33058fs",
"transcript": "ENST00000715174.1",
"protein_id": "ENSP00000520370.1",
"transcript_support_level": null,
"aa_start": 33058,
"aa_end": null,
"aa_length": 35853,
"cds_start": 99174,
"cds_end": null,
"cds_length": 107562,
"cdna_start": 99406,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "FHPG",
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 305,
"exon_rank_end": null,
"exon_count": 313,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.94665_94672delCCATCCTG",
"hgvs_p": "p.Phe31555fs",
"transcript": "NM_001256850.1",
"protein_id": "NP_001243779.1",
"transcript_support_level": null,
"aa_start": 31555,
"aa_end": null,
"aa_length": 34350,
"cds_start": 94665,
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"cds_length": 103053,
"cdna_start": 94897,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 305,
"exon_rank_end": null,
"exon_count": 313,
"intron_rank": null,
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"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.94665_94672delCCATCCTG",
"hgvs_p": "p.Phe31555fs",
"transcript": "ENST00000591111.5",
"protein_id": "ENSP00000465570.1",
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"aa_start": 31555,
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"cds_start": 94665,
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},
{
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"consequences": [
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],
"exon_rank": 304,
"exon_rank_end": null,
"exon_count": 312,
"intron_rank": null,
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"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.91884_91891delCCATCCTG",
"hgvs_p": "p.Phe30628fs",
"transcript": "NM_133378.4",
"protein_id": "NP_596869.4",
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"aa_start": 30628,
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"cds_start": 91884,
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},
{
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"strand": false,
"consequences": [
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],
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"exon_count": 312,
"intron_rank": null,
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"gene_symbol": "TTN",
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"hgvs_c": "c.91884_91891delCCATCCTG",
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"transcript": "ENST00000342992.11",
"protein_id": "ENSP00000343764.6",
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},
{
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],
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"intron_rank": null,
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"gene_symbol": "TTN",
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"transcript": "NM_133437.4",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": 183,
"exon_rank_end": null,
"exon_count": 191,
"intron_rank": null,
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"gene_symbol": "TTN",
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"hgvs_c": "c.72969_72976delCCATCCTG",
"hgvs_p": "p.Phe24323fs",
"transcript": "ENST00000342175.12",
"protein_id": "ENSP00000340554.6",
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},
{
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],
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"gene_symbol": "TTN",
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"hgvs_c": "c.72768_72775delCCATCCTG",
"hgvs_p": "p.Phe24256fs",
"transcript": "NM_133432.3",
"protein_id": "NP_597676.3",
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},
{
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"consequences": [
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],
"exon_rank": 183,
"exon_rank_end": null,
"exon_count": 191,
"intron_rank": null,
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"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.72768_72775delCCATCCTG",
"hgvs_p": "p.Phe24256fs",
"transcript": "ENST00000359218.11",
"protein_id": "ENSP00000352154.5",
"transcript_support_level": 5,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 183,
"exon_rank_end": null,
"exon_count": 191,
"intron_rank": null,
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"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.72393_72400delCCATCCTG",
"hgvs_p": "p.Phe24131fs",
"transcript": "NM_003319.4",
"protein_id": "NP_003310.4",
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},
{
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],
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"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.72393_72400delCCATCCTG",
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"transcript": "ENST00000460472.6",
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},
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],
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"intron_rank": null,
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"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.98481_98488delCCATCCTG",
"hgvs_p": "p.Phe32827fs",
"transcript": "XM_017004819.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
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"exon_rank_end": null,
"exon_count": 317,
"intron_rank": null,
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"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.94593_94600delCCATCCTG",
"hgvs_p": "p.Phe31531fs",
"transcript": "XM_047445660.1",
"protein_id": "XP_047301616.1",
"transcript_support_level": null,
"aa_start": 31531,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 305,
"exon_rank_end": null,
"exon_count": 313,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTN",
"gene_hgnc_id": 12403,
"hgvs_c": "c.94257_94264delCCATCCTG",
"hgvs_p": "p.Phe31419fs",
"transcript": "XM_047445661.1",
"protein_id": "XP_047301617.1",
"transcript_support_level": null,
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"cds_start": 94257,
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{
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],
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"clinvar_classification": "Likely pathogenic",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LP:2",
"phenotype_combined": "Dilated cardiomyopathy 1G|Dilated cardiomyopathy 1G;Autosomal recessive limb-girdle muscular dystrophy type 2J",
"pathogenicity_classification_combined": "Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}