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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-178621668-A-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=178621668&ref=A&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 178621668,
      "ref": "A",
      "alt": "T",
      "effect": "stop_gained",
      "transcript": "ENST00000589042.5",
      "consequences": [
        {
          "aa_ref": "C",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 245,
          "exon_rank_end": null,
          "exon_count": 363,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.45156T>A",
          "hgvs_p": "p.Cys15052*",
          "transcript": "NM_001267550.2",
          "protein_id": "NP_001254479.2",
          "transcript_support_level": null,
          "aa_start": 15052,
          "aa_end": null,
          "aa_length": 35991,
          "cds_start": 45156,
          "cds_end": null,
          "cds_length": 107976,
          "cdna_start": 45381,
          "cdna_end": null,
          "cdna_length": 109224,
          "mane_select": "ENST00000589042.5",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "*",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 245,
          "exon_rank_end": null,
          "exon_count": 363,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.45156T>A",
          "hgvs_p": "p.Cys15052*",
          "transcript": "ENST00000589042.5",
          "protein_id": "ENSP00000467141.1",
          "transcript_support_level": 5,
          "aa_start": 15052,
          "aa_end": null,
          "aa_length": 35991,
          "cds_start": 45156,
          "cds_end": null,
          "cds_length": 107976,
          "cdna_start": 45381,
          "cdna_end": null,
          "cdna_length": 109224,
          "mane_select": "NM_001267550.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 243,
          "exon_rank_end": null,
          "exon_count": 361,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.45000T>A",
          "hgvs_p": "p.Cys15000*",
          "transcript": "ENST00000446966.2",
          "protein_id": "ENSP00000408004.2",
          "transcript_support_level": 1,
          "aa_start": 15000,
          "aa_end": null,
          "aa_length": 35939,
          "cds_start": 45000,
          "cds_end": null,
          "cds_length": 107820,
          "cdna_start": 45225,
          "cdna_end": null,
          "cdna_length": 109068,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 243,
          "exon_rank_end": null,
          "exon_count": 361,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.44880T>A",
          "hgvs_p": "p.Cys14960*",
          "transcript": "ENST00000436599.2",
          "protein_id": "ENSP00000405517.2",
          "transcript_support_level": 1,
          "aa_start": 14960,
          "aa_end": null,
          "aa_length": 35899,
          "cds_start": 44880,
          "cds_end": null,
          "cds_length": 107700,
          "cdna_start": 45105,
          "cdna_end": null,
          "cdna_length": 108948,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 238,
          "exon_rank_end": null,
          "exon_count": 356,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.44598T>A",
          "hgvs_p": "p.Cys14866*",
          "transcript": "ENST00000426232.6",
          "protein_id": "ENSP00000392336.2",
          "transcript_support_level": 1,
          "aa_start": 14866,
          "aa_end": null,
          "aa_length": 35805,
          "cds_start": 44598,
          "cds_end": null,
          "cds_length": 107418,
          "cdna_start": 44823,
          "cdna_end": null,
          "cdna_length": 108666,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 247,
          "exon_rank_end": null,
          "exon_count": 365,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.45156T>A",
          "hgvs_p": "p.Cys15052*",
          "transcript": "ENST00000412264.2",
          "protein_id": "ENSP00000394672.2",
          "transcript_support_level": 3,
          "aa_start": 15052,
          "aa_end": null,
          "aa_length": 35991,
          "cds_start": 45156,
          "cds_end": null,
          "cds_length": 107976,
          "cdna_start": 45645,
          "cdna_end": null,
          "cdna_length": 109488,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 244,
          "exon_rank_end": null,
          "exon_count": 362,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.45072T>A",
          "hgvs_p": "p.Cys15024*",
          "transcript": "ENST00000425332.3",
          "protein_id": "ENSP00000396805.3",
          "transcript_support_level": 5,
          "aa_start": 15024,
          "aa_end": null,
          "aa_length": 35963,
          "cds_start": 45072,
          "cds_end": null,
          "cds_length": 107892,
          "cdna_start": 45297,
          "cdna_end": null,
          "cdna_length": 109140,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 242,
          "exon_rank_end": null,
          "exon_count": 360,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.44742T>A",
          "hgvs_p": "p.Cys14914*",
          "transcript": "ENST00000715174.1",
          "protein_id": "ENSP00000520370.1",
          "transcript_support_level": null,
          "aa_start": 14914,
          "aa_end": null,
          "aa_length": 35853,
          "cds_start": 44742,
          "cds_end": null,
          "cds_length": 107562,
          "cdna_start": 44967,
          "cdna_end": null,
          "cdna_length": 108810,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 195,
          "exon_rank_end": null,
          "exon_count": 313,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.40233T>A",
          "hgvs_p": "p.Cys13411*",
          "transcript": "NM_001256850.1",
          "protein_id": "NP_001243779.1",
          "transcript_support_level": null,
          "aa_start": 13411,
          "aa_end": null,
          "aa_length": 34350,
          "cds_start": 40233,
          "cds_end": null,
          "cds_length": 103053,
          "cdna_start": 40458,
          "cdna_end": null,
          "cdna_length": 104301,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 195,
          "exon_rank_end": null,
          "exon_count": 313,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.40233T>A",
          "hgvs_p": "p.Cys13411*",
          "transcript": "ENST00000591111.5",
          "protein_id": "ENSP00000465570.1",
          "transcript_support_level": 5,
          "aa_start": 13411,
          "aa_end": null,
          "aa_length": 34350,
          "cds_start": 40233,
          "cds_end": null,
          "cds_length": 103053,
          "cdna_start": 40458,
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          "cdna_length": 104301,
          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": "C",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 194,
          "exon_rank_end": null,
          "exon_count": 312,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.37452T>A",
          "hgvs_p": "p.Cys12484*",
          "transcript": "NM_133378.4",
          "protein_id": "NP_596869.4",
          "transcript_support_level": null,
          "aa_start": 12484,
          "aa_end": null,
          "aa_length": 33423,
          "cds_start": 37452,
          "cds_end": null,
          "cds_length": 100272,
          "cdna_start": 37677,
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          "mane_select": null,
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          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 194,
          "exon_rank_end": null,
          "exon_count": 312,
          "intron_rank": null,
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          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.37452T>A",
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          "transcript": "ENST00000342992.11",
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          "cds_start": 37452,
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        {
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          "consequences": [
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          "intron_rank": null,
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          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.18537T>A",
          "hgvs_p": "p.Cys6179*",
          "transcript": "NM_133437.4",
          "protein_id": "NP_597681.4",
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        {
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          "exon_count": 191,
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          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.18537T>A",
          "hgvs_p": "p.Cys6179*",
          "transcript": "ENST00000342175.12",
          "protein_id": "ENSP00000340554.6",
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        {
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        {
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          "exon_count": 191,
          "intron_rank": null,
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          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.18336T>A",
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          "transcript": "ENST00000359218.11",
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        {
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          ],
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          "exon_count": 191,
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          "gene_symbol": "TTN",
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          "hgvs_c": "c.17961T>A",
          "hgvs_p": "p.Cys5987*",
          "transcript": "NM_003319.4",
          "protein_id": "NP_003310.4",
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        {
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        {
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        {
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          "exon_count": 317,
          "intron_rank": null,
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          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.40161T>A",
          "hgvs_p": "p.Cys13387*",
          "transcript": "XM_047445660.1",
          "protein_id": "XP_047301616.1",
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        },
        {
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          "consequences": [
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          ],
          "exon_rank": 195,
          "exon_rank_end": null,
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      "clinvar_disease": "Autosomal recessive limb-girdle muscular dystrophy type 2J,Cardiovascular phenotype,Dilated cardiomyopathy 1G,not provided",
      "clinvar_classification": "Likely pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LP:3",
      "phenotype_combined": "Dilated cardiomyopathy 1G;Autosomal recessive limb-girdle muscular dystrophy type 2J|Cardiovascular phenotype|not provided",
      "pathogenicity_classification_combined": "Likely pathogenic",
      "custom_annotations": null
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  "message": null
}