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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-61514676-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=61514676&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 61514676,
"ref": "T",
"alt": "A",
"effect": "intron_variant",
"transcript": "NM_003400.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "NM_003400.4",
"protein_id": "NP_003391.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1071,
"cds_start": -4,
"cds_end": null,
"cds_length": 3216,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4988,
"mane_select": "ENST00000401558.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000401558.7",
"protein_id": "ENSP00000384863.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1071,
"cds_start": -4,
"cds_end": null,
"cds_length": 3216,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4988,
"mane_select": "NM_003400.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000406957.5",
"protein_id": "ENSP00000385559.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1071,
"cds_start": -4,
"cds_end": null,
"cds_length": 3216,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3479,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "n.307A>T",
"hgvs_p": null,
"transcript": "ENST00000677110.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6571,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000404992.6",
"protein_id": "ENSP00000385942.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 1071,
"cds_start": -4,
"cds_end": null,
"cds_length": 3216,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4105,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000676553.1",
"protein_id": "ENSP00000504247.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1071,
"cds_start": -4,
"cds_end": null,
"cds_length": 3216,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4603,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000676667.1",
"protein_id": "ENSP00000503809.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1071,
"cds_start": -4,
"cds_end": null,
"cds_length": 3216,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5801,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000677150.1",
"protein_id": "ENSP00000503167.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1071,
"cds_start": -4,
"cds_end": null,
"cds_length": 3216,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4641,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000677239.1",
"protein_id": "ENSP00000504087.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1071,
"cds_start": -4,
"cds_end": null,
"cds_length": 3216,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4776,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000677417.1",
"protein_id": "ENSP00000503572.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1071,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000677813.1",
"protein_id": "ENSP00000504543.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000677814.1",
"protein_id": "ENSP00000504848.1",
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 6,
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"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
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"transcript": "ENST00000677928.1",
"protein_id": "ENSP00000504198.1",
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"aa_start": null,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 24,
"intron_rank": 3,
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"gene_symbol": "XPO1",
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"hgvs_c": "c.301+7935A>T",
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"transcript": "ENST00000677933.1",
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},
{
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"intron_variant"
],
"exon_rank": null,
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"intron_rank": 5,
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"gene_symbol": "XPO1",
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"hgvs_c": "c.301+7935A>T",
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"transcript": "ENST00000678182.1",
"protein_id": "ENSP00000504594.1",
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},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 26,
"intron_rank": 5,
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"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
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"transcript": "ENST00000678790.1",
"protein_id": "ENSP00000503419.1",
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},
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],
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"intron_rank": 5,
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"gene_symbol": "XPO1",
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"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000676771.1",
"protein_id": "ENSP00000503808.1",
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"feature": null
},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "NM_001410799.1",
"protein_id": "NP_001397728.1",
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},
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 24,
"intron_rank": 4,
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"gene_symbol": "XPO1",
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"hgvs_c": "c.301+7935A>T",
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"transcript": "ENST00000676999.1",
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},
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],
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"gene_symbol": "XPO1",
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},
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],
"exon_rank": null,
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"intron_rank": 4,
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"gene_symbol": "XPO1",
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"hgvs_c": "c.301+7935A>T",
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},
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 24,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.85+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000677803.1",
"protein_id": "ENSP00000503702.1",
"transcript_support_level": null,
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"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "XPO1",
"gene_hgnc_id": 12825,
"hgvs_c": "c.301+7935A>T",
"hgvs_p": null,
"transcript": "ENST00000678877.1",
"protein_id": "ENSP00000502889.1",
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"cdna_start": null,
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