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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-9502349-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=9502349&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 9502349,
      "ref": "C",
      "alt": "G",
      "effect": "intron_variant",
      "transcript": "ENST00000310823.8",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "c.1545-73G>C",
          "hgvs_p": null,
          "transcript": "NM_003183.6",
          "protein_id": "NP_003174.3",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 824,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2475,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4391,
          "mane_select": "ENST00000310823.8",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "c.1545-73G>C",
          "hgvs_p": null,
          "transcript": "ENST00000310823.8",
          "protein_id": "ENSP00000309968.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 824,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2475,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4391,
          "mane_select": "NM_003183.6",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": 11,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "c.1455-73G>C",
          "hgvs_p": null,
          "transcript": "ENST00000699318.1",
          "protein_id": "ENSP00000514297.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 794,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2385,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3528,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "c.885-73G>C",
          "hgvs_p": null,
          "transcript": "NM_001382777.1",
          "protein_id": "NP_001369706.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 604,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1815,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4411,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "c.1545-73G>C",
          "hgvs_p": null,
          "transcript": "ENST00000699324.1",
          "protein_id": "ENSP00000514300.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 577,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1734,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4776,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "c.1545-73G>C",
          "hgvs_p": null,
          "transcript": "ENST00000699325.1",
          "protein_id": "ENSP00000514301.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 551,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1656,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2106,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "c.648-73G>C",
          "hgvs_p": null,
          "transcript": "NM_001382778.1",
          "protein_id": "NP_001369707.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 525,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1578,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4416,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000239300",
          "gene_hgnc_id": null,
          "hgvs_c": "n.120+808C>G",
          "hgvs_p": null,
          "transcript": "ENST00000472619.3",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 384,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000239300",
          "gene_hgnc_id": null,
          "hgvs_c": "n.106+808C>G",
          "hgvs_p": null,
          "transcript": "ENST00000480764.6",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 597,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 8,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "n.*1005-73G>C",
          "hgvs_p": null,
          "transcript": "ENST00000647610.1",
          "protein_id": "ENSP00000497929.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2513,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": 11,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "n.*1609-73G>C",
          "hgvs_p": null,
          "transcript": "ENST00000647622.1",
          "protein_id": "ENSP00000514299.1",
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          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 5715,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "n.*1075-73G>C",
          "hgvs_p": null,
          "transcript": "ENST00000647979.1",
          "protein_id": "ENSP00000497542.1",
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          "cds_start": -4,
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          "cdna_start": null,
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        {
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": 13,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "n.1772-73G>C",
          "hgvs_p": null,
          "transcript": "ENST00000648548.1",
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        {
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          ],
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          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "n.1615-73G>C",
          "hgvs_p": null,
          "transcript": "ENST00000648857.1",
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          "cdna_length": 3327,
          "mane_select": null,
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        },
        {
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
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          "intron_rank": 11,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "n.3656-73G>C",
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          "transcript": "ENST00000649068.2",
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          "consequences": [
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          "intron_rank": 12,
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          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "n.*1306-73G>C",
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          "transcript": "ENST00000649227.1",
          "protein_id": "ENSP00000497830.1",
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        {
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          "strand": false,
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          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 11,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "n.1355-73G>C",
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          "transcript": "ENST00000649686.1",
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        {
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          "canonical": false,
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          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "n.3735-73G>C",
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          "transcript": "ENST00000649972.1",
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          "gene_symbol": "ADAM17",
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          "hgvs_c": "n.*1326-73G>C",
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          "gene_symbol": "ADAM17",
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          "hgvs_c": "n.1493-73G>C",
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        },
        {
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 18,
          "intron_rank": 11,
          "intron_rank_end": null,
          "gene_symbol": "ADAM17",
          "gene_hgnc_id": 195,
          "hgvs_c": "n.1335-73G>C",
          "hgvs_p": null,
          "transcript": "ENST00000699315.1",
          "protein_id": null,
          "transcript_support_level": null,
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