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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-96601556-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=96601556&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 96601556,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000431828.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "KANSL3",
"gene_hgnc_id": 25473,
"hgvs_c": "c.2616+87A>G",
"hgvs_p": null,
"transcript": "NM_001115016.3",
"protein_id": "NP_001108488.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 878,
"cds_start": -4,
"cds_end": null,
"cds_length": 2637,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5156,
"mane_select": "ENST00000431828.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "KANSL3",
"gene_hgnc_id": 25473,
"hgvs_c": "c.2616+87A>G",
"hgvs_p": null,
"transcript": "ENST00000431828.6",
"protein_id": "ENSP00000396749.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 878,
"cds_start": -4,
"cds_end": null,
"cds_length": 2637,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5156,
"mane_select": "NM_001115016.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "KANSL3",
"gene_hgnc_id": 25473,
"hgvs_c": "n.*2458+87A>G",
"hgvs_p": null,
"transcript": "ENST00000354204.10",
"protein_id": "ENSP00000346144.7",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5253,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "KANSL3",
"gene_hgnc_id": 25473,
"hgvs_c": "n.*128+87A>G",
"hgvs_p": null,
"transcript": "ENST00000420155.5",
"protein_id": "ENSP00000414426.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5028,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "KANSL3",
"gene_hgnc_id": 25473,
"hgvs_c": "n.2477+87A>G",
"hgvs_p": null,
"transcript": "ENST00000487070.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4937,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 21,
"intron_rank_end": null,
"gene_symbol": "KANSL3",
"gene_hgnc_id": 25473,
"hgvs_c": "c.2694+87A>G",
"hgvs_p": null,
"transcript": "NM_001349256.2",
"protein_id": "NP_001336185.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 907,
"cds_start": -4,
"cds_end": null,
"cds_length": 2724,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3625,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 21,
"intron_rank_end": null,
"gene_symbol": "KANSL3",
"gene_hgnc_id": 25473,
"hgvs_c": "c.2694+87A>G",
"hgvs_p": null,
"transcript": "NM_001349257.2",
"protein_id": "NP_001336186.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 904,
"cds_start": -4,
"cds_end": null,
"cds_length": 2715,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5234,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 21,
"intron_rank_end": null,
"gene_symbol": "KANSL3",
"gene_hgnc_id": 25473,
"hgvs_c": "c.2694+87A>G",
"hgvs_p": null,
"transcript": "ENST00000666923.1",
"protein_id": "ENSP00000499674.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 904,
"cds_start": -4,
"cds_end": null,
"cds_length": 2715,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5226,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 21,
"intron_rank_end": null,
"gene_symbol": "KANSL3",
"gene_hgnc_id": 25473,
"hgvs_c": "c.2688+87A>G",
"hgvs_p": null,
"transcript": "NM_001349258.2",
"protein_id": "NP_001336187.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 902,
"cds_start": -4,
"cds_end": null,
"cds_length": 2709,
"cdna_start": null,
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"cdna_length": 5228,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 21,
"intron_rank_end": null,
"gene_symbol": "KANSL3",
"gene_hgnc_id": 25473,
"hgvs_c": "c.2433+87A>G",
"hgvs_p": null,
"transcript": "NM_001349259.2",
"protein_id": "NP_001336188.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 817,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 21,
"intron_rank": 20,
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"gene_symbol": "KANSL3",
"gene_hgnc_id": 25473,
"hgvs_c": "c.2061+87A>G",
"hgvs_p": null,
"transcript": "NM_001349260.2",
"protein_id": "NP_001336189.1",
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"cds_start": -4,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "KANSL3",
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"transcript": "NM_001349261.2",
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},
{
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"strand": false,
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],
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"exon_count": 20,
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"gene_symbol": "KANSL3",
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"hgvs_c": "c.2010+87A>G",
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"transcript": "NM_001349262.2",
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},
{
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],
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"gene_symbol": "KANSL3",
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"hgvs_c": "n.*2060+87A>G",
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"transcript": "ENST00000444759.5",
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},
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],
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"gene_symbol": "KANSL3",
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"transcript": "ENST00000447759.5",
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},
{
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],
"exon_rank": null,
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"gene_symbol": "KANSL3",
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"hgvs_c": "n.269+87A>G",
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},
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],
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"gene_symbol": "KANSL3",
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"hgvs_c": "n.*2138+87A>G",
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"transcript": "ENST00000597150.5",
"protein_id": "ENSP00000473116.1",
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},
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],
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"intron_rank": 21,
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"gene_symbol": "KANSL3",
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"hgvs_c": "n.2694+87A>G",
"hgvs_p": null,
"transcript": "ENST00000670907.1",
"protein_id": "ENSP00000499297.1",
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},
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"strand": false,
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],
"exon_rank": null,
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"intron_rank": 20,
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"gene_symbol": "KANSL3",
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"hgvs_c": "n.2757+87A>G",
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},
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],
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},
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],
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"gene_symbol": "KANSL3",
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"hgvs_c": "n.2605+87A>G",
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},
{
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"strand": false,
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],
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"exon_count": 21,
"intron_rank": 20,
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"gene_symbol": "KANSL3",
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},
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