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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 20-13590527-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=13590527&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "20",
"pos": 13590527,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000337743.9",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "c.283-3157C>T",
"hgvs_p": null,
"transcript": "NM_017714.3",
"protein_id": "NP_060184.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 420,
"cds_start": -4,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2342,
"mane_select": "ENST00000337743.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "c.283-3157C>T",
"hgvs_p": null,
"transcript": "ENST00000337743.9",
"protein_id": "ENSP00000338624.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 420,
"cds_start": -4,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2342,
"mane_select": "NM_017714.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "c.-24-3157C>T",
"hgvs_p": null,
"transcript": "NM_001323603.2",
"protein_id": "NP_001310532.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 318,
"cds_start": -4,
"cds_end": null,
"cds_length": 957,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2609,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "c.-24-3157C>T",
"hgvs_p": null,
"transcript": "NM_001323604.2",
"protein_id": "NP_001310533.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 318,
"cds_start": -4,
"cds_end": null,
"cds_length": 957,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2417,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "c.214-3157C>T",
"hgvs_p": null,
"transcript": "ENST00000455532.5",
"protein_id": "ENSP00000400580.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 304,
"cds_start": -4,
"cds_end": null,
"cds_length": 916,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1000,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "c.282+32919C>T",
"hgvs_p": null,
"transcript": "NM_001323602.2",
"protein_id": "NP_001310531.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 289,
"cds_start": -4,
"cds_end": null,
"cds_length": 870,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1949,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "n.367-3157C>T",
"hgvs_p": null,
"transcript": "ENST00000465381.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
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"cdna_length": 993,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "n.709-3157C>T",
"hgvs_p": null,
"transcript": "ENST00000476108.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 829,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "n.367-3157C>T",
"hgvs_p": null,
"transcript": "ENST00000480436.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2302,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "n.634-3157C>T",
"hgvs_p": null,
"transcript": "ENST00000483898.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 13,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "n.396-3157C>T",
"hgvs_p": null,
"transcript": "NR_136628.2",
"protein_id": null,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 4,
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"gene_symbol": "TASP1",
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},
{
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"strand": false,
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],
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"transcript": "NR_136630.2",
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},
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],
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},
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],
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},
{
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"consequences": [
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],
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"intron_rank": 4,
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"gene_symbol": "TASP1",
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"hgvs_c": "c.283-3157C>T",
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},
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},
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],
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"gene_symbol": "TASP1",
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"transcript": "XM_047440270.1",
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"strand": false,
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],
"exon_rank": null,
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"intron_rank": 4,
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"gene_symbol": "TASP1",
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"hgvs_c": "c.283-3157C>T",
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],
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],
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},
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],
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"gene_symbol": "TASP1",
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"hgvs_c": "c.-24-3157C>T",
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"transcript": "XM_047440274.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
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"exon_count": 10,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TASP1",
"gene_hgnc_id": 15859,
"hgvs_c": "c.282+32919C>T",
"hgvs_p": null,
"transcript": "XM_047440275.1",
"protein_id": "XP_047296231.1",
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},
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"consequences": [
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}
],
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}