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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 20-33386589-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=33386589&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "20",
      "pos": 33386589,
      "ref": "G",
      "alt": "A",
      "effect": "intron_variant",
      "transcript": "NM_001365728.1",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "CDK5RAP1",
          "gene_hgnc_id": 15880,
          "hgvs_c": "c.755+734C>T",
          "hgvs_p": null,
          "transcript": "NM_016408.4",
          "protein_id": "NP_057492.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 587,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1764,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000346416.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_016408.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "CDK5RAP1",
          "gene_hgnc_id": 15880,
          "hgvs_c": "c.755+734C>T",
          "hgvs_p": null,
          "transcript": "ENST00000346416.7",
          "protein_id": "ENSP00000217372.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 587,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1764,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_016408.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000346416.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "CDK5RAP1",
          "gene_hgnc_id": 15880,
          "hgvs_c": "c.755+734C>T",
          "hgvs_p": null,
          "transcript": "ENST00000339269.5",
          "protein_id": "ENSP00000341840.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 510,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1533,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000339269.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "CDK5RAP1",
          "gene_hgnc_id": 15880,
          "hgvs_c": "c.755+734C>T",
          "hgvs_p": null,
          "transcript": "ENST00000874266.1",
          "protein_id": "ENSP00000544325.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 618,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1857,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874266.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "CDK5RAP1",
          "gene_hgnc_id": 15880,
          "hgvs_c": "c.755+734C>T",
          "hgvs_p": null,
          "transcript": "ENST00000874267.1",
          "protein_id": "ENSP00000544326.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 604,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1815,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874267.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "CDK5RAP1",
          "gene_hgnc_id": 15880,
          "hgvs_c": "c.755+734C>T",
          "hgvs_p": null,
          "transcript": "NM_001365728.1",
          "protein_id": "NP_001352657.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 601,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1806,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001365728.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "CDK5RAP1",
          "gene_hgnc_id": 15880,
          "hgvs_c": "c.755+734C>T",
          "hgvs_p": null,
          "transcript": "ENST00000357886.8",
          "protein_id": "ENSP00000350558.4",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 601,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1806,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000357886.8"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "CDK5RAP1",
          "gene_hgnc_id": 15880,
          "hgvs_c": "c.755+734C>T",
          "hgvs_p": null,
          "transcript": "ENST00000874261.1",
          "protein_id": "ENSP00000544320.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 596,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1791,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874261.1"
        },
        {
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          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 14,
          "intron_rank": 6,
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          "gene_symbol": "CDK5RAP1",
          "gene_hgnc_id": 15880,
          "hgvs_c": "c.779+734C>T",
          "hgvs_p": null,
          "transcript": "ENST00000912373.1",
          "protein_id": "ENSP00000582432.1",
          "transcript_support_level": null,
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          "aa_length": 595,
          "cds_start": null,
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        {
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          "consequences": [
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          "intron_rank": 6,
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          "gene_symbol": "CDK5RAP1",
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          "hgvs_c": "c.758+734C>T",
          "hgvs_p": null,
          "transcript": "NM_016082.4",
          "protein_id": "NP_057166.4",
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        {
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}