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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 20-34824068-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=34824068&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "20",
"pos": 34824068,
"ref": "A",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000359003.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NCOA6",
"gene_hgnc_id": 15936,
"hgvs_c": "c.-164+1404T>C",
"hgvs_p": null,
"transcript": "NM_014071.5",
"protein_id": "NP_054790.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2063,
"cds_start": -4,
"cds_end": null,
"cds_length": 6192,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7083,
"mane_select": "ENST00000359003.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NCOA6",
"gene_hgnc_id": 15936,
"hgvs_c": "c.-164+1404T>C",
"hgvs_p": null,
"transcript": "ENST00000359003.7",
"protein_id": "ENSP00000351894.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2063,
"cds_start": -4,
"cds_end": null,
"cds_length": 6192,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7083,
"mane_select": "NM_014071.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NCOA6",
"gene_hgnc_id": 15936,
"hgvs_c": "c.-164+1404T>C",
"hgvs_p": null,
"transcript": "NM_001438233.1",
"protein_id": "NP_001425162.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2062,
"cds_start": -4,
"cds_end": null,
"cds_length": 6189,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7080,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NCOA6",
"gene_hgnc_id": 15936,
"hgvs_c": "c.-164+1404T>C",
"hgvs_p": null,
"transcript": "NM_001438235.1",
"protein_id": "NP_001425164.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2052,
"cds_start": -4,
"cds_end": null,
"cds_length": 6159,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7050,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NCOA6",
"gene_hgnc_id": 15936,
"hgvs_c": "c.-164+1404T>C",
"hgvs_p": null,
"transcript": "NM_001438234.1",
"protein_id": "NP_001425163.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2051,
"cds_start": -4,
"cds_end": null,
"cds_length": 6156,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7047,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NCOA6",
"gene_hgnc_id": 15936,
"hgvs_c": "c.-164+1404T>C",
"hgvs_p": null,
"transcript": "NM_001242539.3",
"protein_id": "NP_001229468.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1070,
"cds_start": -4,
"cds_end": null,
"cds_length": 3213,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4104,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NCOA6",
"gene_hgnc_id": 15936,
"hgvs_c": "c.-164+1404T>C",
"hgvs_p": null,
"transcript": "ENST00000612493.4",
"protein_id": "ENSP00000481177.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1070,
"cds_start": -4,
"cds_end": null,
"cds_length": 3213,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4082,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NCOA6",
"gene_hgnc_id": 15936,
"hgvs_c": "c.-164+1404T>C",
"hgvs_p": null,
"transcript": "ENST00000616167.1",
"protein_id": "ENSP00000481935.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 982,
"cds_start": -4,
"cds_end": null,
"cds_length": 2949,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3271,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NCOA6",
"gene_hgnc_id": 15936,
"hgvs_c": "c.-164+1404T>C",
"hgvs_p": null,
"transcript": "XM_017027739.2",
"protein_id": "XP_016883228.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2087,
"cds_start": -4,
"cds_end": null,
"cds_length": 6264,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7155,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 1,
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"gene_symbol": "NCOA6",
"gene_hgnc_id": 15936,
"hgvs_c": "c.-164+1404T>C",
"hgvs_p": null,
"transcript": "XM_017027741.2",
"protein_id": "XP_016883230.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 2086,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NCOA6",
"gene_hgnc_id": 15936,
"hgvs_c": "c.-164+1404T>C",
"hgvs_p": null,
"transcript": "XM_017027742.3",
"protein_id": "XP_016883231.1",
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"aa_start": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "NCOA6",
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"hgvs_c": "c.-164+1404T>C",
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"transcript": "XM_011528721.4",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "NCOA6",
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"hgvs_c": "c.-164+1404T>C",
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"transcript": "XM_047440048.1",
"protein_id": "XP_047296004.1",
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},
{
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],
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"gene_symbol": "NCOA6",
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"hgvs_c": "c.-234+1404T>C",
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},
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],
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"transcript": "XM_017027743.3",
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},
{
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],
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"gene_symbol": "NCOA6",
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"hgvs_c": "c.-164+1404T>C",
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"transcript": "XM_011528726.4",
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],
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"gene_symbol": "NCOA6",
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"hgvs_c": "c.-164+1404T>C",
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"transcript": "XM_011528727.4",
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},
{
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],
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"gene_symbol": "NCOA6",
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"hgvs_c": "c.-164+1404T>C",
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"transcript": "XM_047440051.1",
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},
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],
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"gene_symbol": "NCOA6",
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"hgvs_c": "c.-234+1404T>C",
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},
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],
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},
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"strand": false,
"consequences": [
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],
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"intron_rank": 1,
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"gene_symbol": "NCOA6",
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"hgvs_c": "c.-164+1404T>C",
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"transcript": "XM_047440056.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "NCOA6",
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"hgvs_c": "c.-164+1404T>C",
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"transcript": "XM_047440057.1",
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