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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 20-63276109-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=63276109&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "20",
      "pos": 63276109,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_175609.3",
      "consequences": [
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "NM_018209.4",
          "protein_id": "NP_060679.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 406,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1221,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000370283.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_018209.4"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000370283.9",
          "protein_id": "ENSP00000359306.4",
          "transcript_support_level": 1,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 406,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1221,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_018209.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000370283.9"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000353546.7",
          "protein_id": "ENSP00000314615.3",
          "transcript_support_level": 1,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 414,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1245,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000353546.7"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000370275.8",
          "protein_id": "ENSP00000359298.4",
          "transcript_support_level": 1,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 403,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1212,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000370275.8"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000946863.1",
          "protein_id": "ENSP00000616922.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 459,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1380,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000946863.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000906865.1",
          "protein_id": "ENSP00000576924.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 445,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1338,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000906865.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000906867.1",
          "protein_id": "ENSP00000576926.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 445,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1338,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000906867.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000906860.1",
          "protein_id": "ENSP00000576919.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 435,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1308,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000906860.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000946862.1",
          "protein_id": "ENSP00000616921.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 434,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1305,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000946862.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000940139.1",
          "protein_id": "ENSP00000610198.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 433,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1302,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000940139.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000906866.1",
          "protein_id": "ENSP00000576925.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 417,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1254,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000906866.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000906868.1",
          "protein_id": "ENSP00000576927.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 416,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1251,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000906868.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "NM_175609.3",
          "protein_id": "NP_783202.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 414,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1245,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_175609.3"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000906863.1",
          "protein_id": "ENSP00000576922.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 406,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1221,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000906863.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000906869.1",
          "protein_id": "ENSP00000576928.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 406,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1221,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000906869.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000940141.1",
          "protein_id": "ENSP00000610200.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 406,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1221,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000940141.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000940142.1",
          "protein_id": "ENSP00000610201.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 406,
          "cds_start": 79,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000940142.1"
        },
        {
          "aa_ref": "A",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
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          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "NM_001281482.2",
          "protein_id": "NP_001268411.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 403,
          "cds_start": 79,
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          "cds_length": 1212,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001281482.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000906862.1",
          "protein_id": "ENSP00000576921.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
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          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1188,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000906862.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFGAP1",
          "gene_hgnc_id": 15852,
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr",
          "transcript": "ENST00000906861.1",
          "protein_id": "ENSP00000576920.1",
          "transcript_support_level": null,
          "aa_start": 27,
          "aa_end": null,
          "aa_length": 394,
          "cds_start": 79,
          "cds_end": null,
          "cds_length": 1185,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "pseudogene",
          "feature": "XR_007067467.1"
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      ],
      "gene_symbol": "ARFGAP1",
      "gene_hgnc_id": 15852,
      "dbsnp": "rs748339189",
      "frequency_reference_population": 0.0000047888066,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 7,
      "gnomad_exomes_af": 0.00000478881,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 7,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.2961260676383972,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.07000000029802322,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.174,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.1999,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.37,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 6.528,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0.07,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 1,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4",
      "acmg_by_gene": [
        {
          "score": 1,
          "benign_score": 1,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_175609.3",
          "gene_symbol": "ARFGAP1",
          "hgnc_id": 15852,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.79G>A",
          "hgvs_p": "p.Ala27Thr"
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}