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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 21-34792598-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=21&pos=34792598&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "21",
"pos": 34792598,
"ref": "A",
"alt": "C",
"effect": "missense_variant",
"transcript": "ENST00000675419.1",
"consequences": [
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.980T>G",
"hgvs_p": "p.Leu327Arg",
"transcript": "NM_001754.5",
"protein_id": "NP_001745.2",
"transcript_support_level": null,
"aa_start": 327,
"aa_end": null,
"aa_length": 480,
"cds_start": 980,
"cds_end": null,
"cds_length": 1443,
"cdna_start": 1174,
"cdna_end": null,
"cdna_length": 5971,
"mane_select": "ENST00000675419.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.980T>G",
"hgvs_p": "p.Leu327Arg",
"transcript": "ENST00000675419.1",
"protein_id": "ENSP00000501943.1",
"transcript_support_level": null,
"aa_start": 327,
"aa_end": null,
"aa_length": 480,
"cds_start": 980,
"cds_end": null,
"cds_length": 1443,
"cdna_start": 1174,
"cdna_end": null,
"cdna_length": 5971,
"mane_select": "NM_001754.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.980T>G",
"hgvs_p": "p.Leu327Arg",
"transcript": "ENST00000300305.7",
"protein_id": "ENSP00000300305.3",
"transcript_support_level": 1,
"aa_start": 327,
"aa_end": null,
"aa_length": 480,
"cds_start": 980,
"cds_end": null,
"cds_length": 1443,
"cdna_start": 1425,
"cdna_end": null,
"cdna_length": 6222,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.899T>G",
"hgvs_p": "p.Leu300Arg",
"transcript": "ENST00000344691.8",
"protein_id": "ENSP00000340690.4",
"transcript_support_level": 1,
"aa_start": 300,
"aa_end": null,
"aa_length": 453,
"cds_start": 899,
"cds_end": null,
"cds_length": 1362,
"cdna_start": 2477,
"cdna_end": null,
"cdna_length": 7274,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "n.*570T>G",
"hgvs_p": null,
"transcript": "ENST00000482318.5",
"protein_id": "ENSP00000477067.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1710,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "n.*570T>G",
"hgvs_p": null,
"transcript": "ENST00000482318.5",
"protein_id": "ENSP00000477067.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1710,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.899T>G",
"hgvs_p": "p.Leu300Arg",
"transcript": "NM_001001890.3",
"protein_id": "NP_001001890.1",
"transcript_support_level": null,
"aa_start": 300,
"aa_end": null,
"aa_length": 453,
"cds_start": 899,
"cds_end": null,
"cds_length": 1362,
"cdna_start": 2486,
"cdna_end": null,
"cdna_length": 7283,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.707T>G",
"hgvs_p": "p.Leu236Arg",
"transcript": "ENST00000399240.5",
"protein_id": "ENSP00000382184.1",
"transcript_support_level": 3,
"aa_start": 236,
"aa_end": null,
"aa_length": 389,
"cds_start": 707,
"cds_end": null,
"cds_length": 1170,
"cdna_start": 778,
"cdna_end": null,
"cdna_length": 1590,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.980T>G",
"hgvs_p": "p.Leu327Arg",
"transcript": "XM_011529766.3",
"protein_id": "XP_011528068.1",
"transcript_support_level": null,
"aa_start": 327,
"aa_end": null,
"aa_length": 480,
"cds_start": 980,
"cds_end": null,
"cds_length": 1443,
"cdna_start": 1261,
"cdna_end": null,
"cdna_length": 6058,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.980T>G",
"hgvs_p": "p.Leu327Arg",
"transcript": "XM_047441007.1",
"protein_id": "XP_047296963.1",
"transcript_support_level": null,
"aa_start": 327,
"aa_end": null,
"aa_length": 480,
"cds_start": 980,
"cds_end": null,
"cds_length": 1443,
"cdna_start": 1383,
"cdna_end": null,
"cdna_length": 6180,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.944T>G",
"hgvs_p": "p.Leu315Arg",
"transcript": "XM_005261068.4",
"protein_id": "XP_005261125.1",
"transcript_support_level": null,
"aa_start": 315,
"aa_end": null,
"aa_length": 468,
"cds_start": 944,
"cds_end": null,
"cds_length": 1407,
"cdna_start": 967,
"cdna_end": null,
"cdna_length": 5764,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.941T>G",
"hgvs_p": "p.Leu314Arg",
"transcript": "XM_011529767.3",
"protein_id": "XP_011528069.1",
"transcript_support_level": null,
"aa_start": 314,
"aa_end": null,
"aa_length": 467,
"cds_start": 941,
"cds_end": null,
"cds_length": 1404,
"cdna_start": 1135,
"cdna_end": null,
"cdna_length": 5932,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.941T>G",
"hgvs_p": "p.Leu314Arg",
"transcript": "XM_047441009.1",
"protein_id": "XP_047296965.1",
"transcript_support_level": null,
"aa_start": 314,
"aa_end": null,
"aa_length": 467,
"cds_start": 941,
"cds_end": null,
"cds_length": 1404,
"cdna_start": 1344,
"cdna_end": null,
"cdna_length": 6141,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.941T>G",
"hgvs_p": "p.Leu314Arg",
"transcript": "XM_047441010.1",
"protein_id": "XP_047296966.1",
"transcript_support_level": null,
"aa_start": 314,
"aa_end": null,
"aa_length": 467,
"cds_start": 941,
"cds_end": null,
"cds_length": 1404,
"cdna_start": 1222,
"cdna_end": null,
"cdna_length": 6019,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.788T>G",
"hgvs_p": "p.Leu263Arg",
"transcript": "XM_005261069.5",
"protein_id": "XP_005261126.1",
"transcript_support_level": null,
"aa_start": 263,
"aa_end": null,
"aa_length": 416,
"cds_start": 788,
"cds_end": null,
"cds_length": 1251,
"cdna_start": 982,
"cdna_end": null,
"cdna_length": 5779,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.788T>G",
"hgvs_p": "p.Leu263Arg",
"transcript": "XM_047441011.1",
"protein_id": "XP_047296967.1",
"transcript_support_level": null,
"aa_start": 263,
"aa_end": null,
"aa_length": 416,
"cds_start": 788,
"cds_end": null,
"cds_length": 1251,
"cdna_start": 1191,
"cdna_end": null,
"cdna_length": 5988,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.788T>G",
"hgvs_p": "p.Leu263Arg",
"transcript": "XM_047441012.1",
"protein_id": "XP_047296968.1",
"transcript_support_level": null,
"aa_start": 263,
"aa_end": null,
"aa_length": 416,
"cds_start": 788,
"cds_end": null,
"cds_length": 1251,
"cdna_start": 1069,
"cdna_end": null,
"cdna_length": 5866,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.752T>G",
"hgvs_p": "p.Leu251Arg",
"transcript": "XM_047441013.1",
"protein_id": "XP_047296969.1",
"transcript_support_level": null,
"aa_start": 251,
"aa_end": null,
"aa_length": 404,
"cds_start": 752,
"cds_end": null,
"cds_length": 1215,
"cdna_start": 775,
"cdna_end": null,
"cdna_length": 5572,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.749T>G",
"hgvs_p": "p.Leu250Arg",
"transcript": "XM_011529768.3",
"protein_id": "XP_011528070.1",
"transcript_support_level": null,
"aa_start": 250,
"aa_end": null,
"aa_length": 403,
"cds_start": 749,
"cds_end": null,
"cds_length": 1212,
"cdna_start": 943,
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"cdna_length": 5740,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.749T>G",
"hgvs_p": "p.Leu250Arg",
"transcript": "XM_047441014.1",
"protein_id": "XP_047296970.1",
"transcript_support_level": null,
"aa_start": 250,
"aa_end": null,
"aa_length": 403,
"cds_start": 749,
"cds_end": null,
"cds_length": 1212,
"cdna_start": 1152,
"cdna_end": null,
"cdna_length": 5949,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"hgvs_c": "c.749T>G",
"hgvs_p": "p.Leu250Arg",
"transcript": "XM_047441015.1",
"protein_id": "XP_047296971.1",
"transcript_support_level": null,
"aa_start": 250,
"aa_end": null,
"aa_length": 403,
"cds_start": 749,
"cds_end": null,
"cds_length": 1212,
"cdna_start": 1030,
"cdna_end": null,
"cdna_length": 5827,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "RUNX1",
"gene_hgnc_id": 10471,
"dbsnp": "rs915447247",
"frequency_reference_population": 0.0000012555322,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 6.93937e-7,
"gnomad_genomes_af": 0.00000658337,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.818906307220459,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.766,
"revel_prediction": "Pathogenic",
"alphamissense_score": 0.6968,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.26,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 8.729,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 0,
"pathogenic_score": 0,
"criteria": [],
"verdict": "Uncertain_significance",
"transcript": "ENST00000675419.1",
"gene_symbol": "RUNX1",
"hgnc_id": 10471,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.980T>G",
"hgvs_p": "p.Leu327Arg"
}
],
"clinvar_disease": "Hereditary thrombocytopenia and hematologic cancer predisposition syndrome,Hereditary thrombocytopenia and hematological cancer predisposition syndrome associated with RUNX1,Inborn genetic diseases",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "reviewed by expert panel",
"clinvar_submissions_summary": "US:3",
"phenotype_combined": "Hereditary thrombocytopenia and hematological cancer predisposition syndrome associated with RUNX1|Inborn genetic diseases|Hereditary thrombocytopenia and hematologic cancer predisposition syndrome",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}