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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 21-45914500-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=21&pos=45914500&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "21",
      "pos": 45914500,
      "ref": "C",
      "alt": "T",
      "effect": "stop_gained",
      "transcript": "NM_001348241.2",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "NM_001384156.1",
          "protein_id": "NP_001371085.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1116,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000681687.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001384156.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "ENST00000681687.1",
          "protein_id": "ENSP00000505796.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1116,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001384156.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000681687.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.648+406C>T",
          "hgvs_p": null,
          "transcript": "ENST00000400304.1",
          "protein_id": "ENSP00000383159.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 361,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1086,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000400304.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.601-3088C>T",
          "hgvs_p": null,
          "transcript": "ENST00000400308.5",
          "protein_id": "ENSP00000383163.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 345,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1038,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000400308.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.667C>T",
          "hgvs_p": "p.Arg223*",
          "transcript": "NM_001348241.2",
          "protein_id": "NP_001335170.1",
          "transcript_support_level": null,
          "aa_start": 223,
          "aa_end": null,
          "aa_length": 382,
          "cds_start": 667,
          "cds_end": null,
          "cds_length": 1149,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001348241.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": 11,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.744+406C>T",
          "hgvs_p": null,
          "transcript": "NM_001348240.2",
          "protein_id": "NP_001335169.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 394,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1185,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001348240.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.744+406C>T",
          "hgvs_p": null,
          "transcript": "NM_001382279.1",
          "protein_id": "NP_001369208.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 394,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1185,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001382279.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.744+406C>T",
          "hgvs_p": null,
          "transcript": "NM_001348239.2",
          "protein_id": "NP_001335168.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 393,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1182,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001348239.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.744+406C>T",
          "hgvs_p": null,
          "transcript": "NM_001348245.2",
          "protein_id": "NP_001335174.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1122,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001348245.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": 10,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "NM_001382277.1",
          "protein_id": "NP_001369206.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1116,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001382277.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "NM_001382281.1",
          "protein_id": "NP_001369210.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1116,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001382281.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": 10,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "NM_001382282.1",
          "protein_id": "NP_001369211.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1116,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001382282.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 17,
          "intron_rank": 11,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "NM_001382283.1",
          "protein_id": "NP_001369212.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
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          "cds_length": 1116,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001382283.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": 12,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "NM_001382284.1",
          "protein_id": "NP_001369213.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1116,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001382284.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
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          ],
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          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "NM_001382285.1",
          "protein_id": "NP_001369214.1",
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          "aa_start": null,
          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001382285.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": 11,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "NM_001382286.1",
          "protein_id": "NP_001369215.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
          "cds_end": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001382286.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": 10,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "NM_001382287.1",
          "protein_id": "NP_001369216.1",
          "transcript_support_level": null,
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          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
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          "cds_length": 1116,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001382287.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 17,
          "intron_rank": 11,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "NM_001382288.1",
          "protein_id": "NP_001369217.1",
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          "aa_start": null,
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          "cds_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001382288.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
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            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 15,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "NM_020528.3",
          "protein_id": "NP_065389.2",
          "transcript_support_level": null,
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          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_020528.3"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": 10,
          "intron_rank_end": null,
          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "c.675+475C>T",
          "hgvs_p": null,
          "transcript": "ENST00000400314.5",
          "protein_id": "ENSP00000383168.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 371,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1116,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000400314.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 17,
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        {
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          "hgvs_c": "n.435+475C>T",
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        {
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        {
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          ],
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          "gene_symbol": "PCBP3",
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          "hgvs_c": "n.1097+475C>T",
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          "transcript": "NR_145492.2",
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        },
        {
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          ],
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          "exon_count": 13,
          "intron_rank": 9,
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          "gene_symbol": "PCBP3",
          "gene_hgnc_id": 8651,
          "hgvs_c": "n.1052+475C>T",
          "hgvs_p": null,
          "transcript": "NR_145493.2",
          "protein_id": null,
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          "aa_start": null,
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          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "NR_145493.2"
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      ],
      "gene_symbol": "PCBP3",
      "gene_hgnc_id": 8651,
      "dbsnp": "rs440207",
      "frequency_reference_population": 0.44989952,
      "hom_count_reference_population": 24459,
      "allele_count_reference_population": 97612,
      "gnomad_exomes_af": 0.395503,
      "gnomad_genomes_af": 0.473063,
      "gnomad_exomes_ac": 25627,
      "gnomad_genomes_ac": 71985,
      "gnomad_exomes_homalt": 5323,
      "gnomad_genomes_homalt": 19136,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.9200000166893005,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.92,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.07,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -9,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP6,BA1",
      "acmg_by_gene": [
        {
          "score": -9,
          "benign_score": 9,
          "pathogenic_score": 0,
          "criteria": [
            "BP6",
            "BA1"
          ],
          "verdict": "Benign",
          "transcript": "NM_001348241.2",
          "gene_symbol": "PCBP3",
          "hgnc_id": 8651,
          "effects": [
            "stop_gained"
          ],
          "inheritance_mode": "",
          "hgvs_c": "c.667C>T",
          "hgvs_p": "p.Arg223*"
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        {
          "score": -13,
          "benign_score": 13,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6",
            "BA1"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000626237.1",
          "gene_symbol": "ENSG00000280604",
          "hgnc_id": null,
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.205C>T",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "PCBP3-related disorder",
      "clinvar_classification": "Benign",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "phenotype_combined": "PCBP3-related disorder",
      "pathogenicity_classification_combined": "Benign",
      "custom_annotations": null
    }
  ],
  "message": null
}