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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 22-50625639-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=50625639&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "22",
      "pos": 50625639,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_000487.6",
      "consequences": [
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1150G>A",
          "hgvs_p": "p.Glu384Lys",
          "transcript": "NM_000487.6",
          "protein_id": "NP_000478.3",
          "transcript_support_level": null,
          "aa_start": 384,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 1150,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000216124.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_000487.6"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1150G>A",
          "hgvs_p": "p.Glu384Lys",
          "transcript": "ENST00000216124.10",
          "protein_id": "ENSP00000216124.5",
          "transcript_support_level": 1,
          "aa_start": 384,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 1150,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_000487.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000216124.10"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1150G>A",
          "hgvs_p": "p.Glu384Lys",
          "transcript": "ENST00000356098.9",
          "protein_id": "ENSP00000348406.5",
          "transcript_support_level": 1,
          "aa_start": 384,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 1150,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000356098.9"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1150G>A",
          "hgvs_p": "p.Glu384Lys",
          "transcript": "NM_001085425.3",
          "protein_id": "NP_001078894.2",
          "transcript_support_level": null,
          "aa_start": 384,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 1150,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001085425.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1150G>A",
          "hgvs_p": "p.Glu384Lys",
          "transcript": "NM_001085426.3",
          "protein_id": "NP_001078895.2",
          "transcript_support_level": null,
          "aa_start": 384,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 1150,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001085426.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1150G>A",
          "hgvs_p": "p.Glu384Lys",
          "transcript": "NM_001085427.3",
          "protein_id": "NP_001078896.2",
          "transcript_support_level": null,
          "aa_start": 384,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 1150,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001085427.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1150G>A",
          "hgvs_p": "p.Glu384Lys",
          "transcript": "ENST00000395619.3",
          "protein_id": "ENSP00000378981.3",
          "transcript_support_level": 5,
          "aa_start": 384,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 1150,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000395619.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1150G>A",
          "hgvs_p": "p.Glu384Lys",
          "transcript": "ENST00000395621.7",
          "protein_id": "ENSP00000378983.3",
          "transcript_support_level": 2,
          "aa_start": 384,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 1150,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000395621.7"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1138G>A",
          "hgvs_p": "p.Glu380Lys",
          "transcript": "ENST00000861937.1",
          "protein_id": "ENSP00000531996.1",
          "transcript_support_level": null,
          "aa_start": 380,
          "aa_end": null,
          "aa_length": 505,
          "cds_start": 1138,
          "cds_end": null,
          "cds_length": 1518,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861937.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1132G>A",
          "hgvs_p": "p.Glu378Lys",
          "transcript": "ENST00000861939.1",
          "protein_id": "ENSP00000531998.1",
          "transcript_support_level": null,
          "aa_start": 378,
          "aa_end": null,
          "aa_length": 503,
          "cds_start": 1132,
          "cds_end": null,
          "cds_length": 1512,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861939.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1120G>A",
          "hgvs_p": "p.Glu374Lys",
          "transcript": "ENST00000861943.1",
          "protein_id": "ENSP00000532002.1",
          "transcript_support_level": null,
          "aa_start": 374,
          "aa_end": null,
          "aa_length": 499,
          "cds_start": 1120,
          "cds_end": null,
          "cds_length": 1500,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861943.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1145G>A",
          "hgvs_p": "p.Arg382Gln",
          "transcript": "ENST00000861942.1",
          "protein_id": "ENSP00000532001.1",
          "transcript_support_level": null,
          "aa_start": 382,
          "aa_end": null,
          "aa_length": 491,
          "cds_start": 1145,
          "cds_end": null,
          "cds_length": 1476,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861942.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1087G>A",
          "hgvs_p": "p.Glu363Lys",
          "transcript": "ENST00000861936.1",
          "protein_id": "ENSP00000531995.1",
          "transcript_support_level": null,
          "aa_start": 363,
          "aa_end": null,
          "aa_length": 488,
          "cds_start": 1087,
          "cds_end": null,
          "cds_length": 1467,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861936.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1069G>A",
          "hgvs_p": "p.Glu357Lys",
          "transcript": "ENST00000963449.1",
          "protein_id": "ENSP00000633508.1",
          "transcript_support_level": null,
          "aa_start": 357,
          "aa_end": null,
          "aa_length": 482,
          "cds_start": 1069,
          "cds_end": null,
          "cds_length": 1449,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000963449.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.931G>A",
          "hgvs_p": "p.Glu311Lys",
          "transcript": "ENST00000861938.1",
          "protein_id": "ENSP00000531997.1",
          "transcript_support_level": null,
          "aa_start": 311,
          "aa_end": null,
          "aa_length": 436,
          "cds_start": 931,
          "cds_end": null,
          "cds_length": 1311,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861938.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.913G>A",
          "hgvs_p": "p.Glu305Lys",
          "transcript": "ENST00000861940.1",
          "protein_id": "ENSP00000531999.1",
          "transcript_support_level": null,
          "aa_start": 305,
          "aa_end": null,
          "aa_length": 430,
          "cds_start": 913,
          "cds_end": null,
          "cds_length": 1293,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861940.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.892G>A",
          "hgvs_p": "p.Glu298Lys",
          "transcript": "NM_001085428.3",
          "protein_id": "NP_001078897.1",
          "transcript_support_level": null,
          "aa_start": 298,
          "aa_end": null,
          "aa_length": 423,
          "cds_start": 892,
          "cds_end": null,
          "cds_length": 1272,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001085428.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.892G>A",
          "hgvs_p": "p.Glu298Lys",
          "transcript": "NM_001362782.2",
          "protein_id": "NP_001349711.1",
          "transcript_support_level": null,
          "aa_start": 298,
          "aa_end": null,
          "aa_length": 423,
          "cds_start": 892,
          "cds_end": null,
          "cds_length": 1272,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001362782.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.892G>A",
          "hgvs_p": "p.Glu298Lys",
          "transcript": "ENST00000453344.6",
          "protein_id": "ENSP00000412542.2",
          "transcript_support_level": 2,
          "aa_start": 298,
          "aa_end": null,
          "aa_length": 423,
          "cds_start": 892,
          "cds_end": null,
          "cds_length": 1272,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000453344.6"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.520G>A",
          "hgvs_p": "p.Glu174Lys",
          "transcript": "ENST00000861941.1",
          "protein_id": "ENSP00000532000.1",
          "transcript_support_level": null,
          "aa_start": 174,
          "aa_end": null,
          "aa_length": 299,
          "cds_start": 520,
          "cds_end": null,
          "cds_length": 900,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861941.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1108-175G>A",
          "hgvs_p": null,
          "transcript": "XM_011530691.4",
          "protein_id": "XP_011528993.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 387,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1164,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011530691.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1108-175G>A",
          "hgvs_p": null,
          "transcript": "XM_024452241.2",
          "protein_id": "XP_024308009.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 387,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1164,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_024452241.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "c.1108-175G>A",
          "hgvs_p": null,
          "transcript": "XM_047441363.1",
          "protein_id": "XP_047297319.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 387,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1164,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047441363.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARSA",
          "gene_hgnc_id": 713,
          "hgvs_c": "n.16G>A",
          "hgvs_p": null,
          "transcript": "ENST00000608497.1",
          "protein_id": "ENSP00000477013.1",
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000608497.1"
        }
      ],
      "gene_symbol": "ARSA",
      "gene_hgnc_id": 713,
      "dbsnp": "rs74315479",
      "frequency_reference_population": 0.000011154006,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 18,
      "gnomad_exomes_af": 0.0000102634,
      "gnomad_genomes_af": 0.0000197029,
      "gnomad_exomes_ac": 15,
      "gnomad_genomes_ac": 3,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.8065654039382935,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.10999999940395355,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.523,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.0864,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.11,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 1.129,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.11,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 16,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PM1,PM2,PM5,PP2,PP3,PP5_Very_Strong",
      "acmg_by_gene": [
        {
          "score": 16,
          "benign_score": 0,
          "pathogenic_score": 16,
          "criteria": [
            "PM1",
            "PM2",
            "PM5",
            "PP2",
            "PP3",
            "PP5_Very_Strong"
          ],
          "verdict": "Pathogenic",
          "transcript": "NM_000487.6",
          "gene_symbol": "ARSA",
          "hgnc_id": 713,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.1150G>A",
          "hgvs_p": "p.Glu384Lys"
        }
      ],
      "clinvar_disease": " INTERMEDIATE,ARYLSULFATASE A PSEUDODEFICIENCY,Metachromatic leukodystrophy,not provided",
      "clinvar_classification": "Pathogenic/Likely pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:3 LP:1",
      "phenotype_combined": "ARYLSULFATASE A PSEUDODEFICIENCY, INTERMEDIATE|Metachromatic leukodystrophy|not provided",
      "pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}