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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-126036607-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=126036607&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 126036607,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000360370.9",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.382-2929G>A",
"hgvs_p": null,
"transcript": "NM_017836.4",
"protein_id": "NP_060306.4",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 487,
"cds_start": -4,
"cds_end": null,
"cds_length": 1464,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2182,
"mane_select": "ENST00000360370.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.382-2929G>A",
"hgvs_p": null,
"transcript": "ENST00000360370.9",
"protein_id": "ENSP00000353533.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 487,
"cds_start": -4,
"cds_end": null,
"cds_length": 1464,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2182,
"mane_select": "NM_017836.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.382-2929G>A",
"hgvs_p": null,
"transcript": "ENST00000315891.10",
"protein_id": "ENSP00000326070.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 507,
"cds_start": -4,
"cds_end": null,
"cds_length": 1524,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1797,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.427-2929G>A",
"hgvs_p": null,
"transcript": "ENST00000514677.5",
"protein_id": "ENSP00000422828.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 293,
"cds_start": -4,
"cds_end": null,
"cds_length": 882,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 986,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.382-2929G>A",
"hgvs_p": null,
"transcript": "NM_001008485.2",
"protein_id": "NP_001008485.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 507,
"cds_start": -4,
"cds_end": null,
"cds_length": 1524,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1633,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.274-2929G>A",
"hgvs_p": null,
"transcript": "NM_001008486.2",
"protein_id": "NP_001008486.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 471,
"cds_start": -4,
"cds_end": null,
"cds_length": 1416,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1525,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.274-2929G>A",
"hgvs_p": null,
"transcript": "ENST00000346785.9",
"protein_id": "ENSP00000264471.6",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 471,
"cds_start": -4,
"cds_end": null,
"cds_length": 1416,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1705,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.304-2929G>A",
"hgvs_p": null,
"transcript": "NM_001008487.2",
"protein_id": "NP_001008487.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 461,
"cds_start": -4,
"cds_end": null,
"cds_length": 1386,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2618,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.304-2929G>A",
"hgvs_p": null,
"transcript": "ENST00000383598.6",
"protein_id": "ENSP00000373092.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 461,
"cds_start": -4,
"cds_end": null,
"cds_length": 1386,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2330,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.31-2929G>A",
"hgvs_p": null,
"transcript": "NM_001164475.2",
"protein_id": "NP_001157947.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 370,
"cds_start": -4,
"cds_end": null,
"cds_length": 1113,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1942,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 10,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.31-2929G>A",
"hgvs_p": null,
"transcript": "ENST00000508835.5",
"protein_id": "ENSP00000427409.1",
"transcript_support_level": 2,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "SLC41A3",
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"hgvs_c": "c.538-2929G>A",
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"transcript": "ENST00000513723.5",
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},
{
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"strand": false,
"consequences": [
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],
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"exon_count": 5,
"intron_rank": 3,
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"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.382-2929G>A",
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"transcript": "ENST00000512470.5",
"protein_id": "ENSP00000421008.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "SLC41A3",
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"hgvs_c": "c.427-10128G>A",
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"transcript": "ENST00000510651.5",
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},
{
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"strand": false,
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],
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"gene_symbol": "SLC41A3",
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"hgvs_c": "c.382-2929G>A",
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"transcript": "ENST00000504035.5",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 3,
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"gene_symbol": "SLC41A3",
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"hgvs_c": "c.382-2929G>A",
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"transcript": "ENST00000507280.5",
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},
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],
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"gene_symbol": "SLC41A3",
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"hgvs_c": "c.382-2929G>A",
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"transcript": "ENST00000514891.5",
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},
{
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],
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"exon_count": 4,
"intron_rank": 3,
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"gene_symbol": "SLC41A3",
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"hgvs_c": "c.382-2929G>A",
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"transcript": "ENST00000509064.5",
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},
{
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"strand": false,
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],
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"gene_symbol": "SLC41A3",
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"hgvs_c": "c.274-2929G>A",
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},
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],
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"gene_symbol": "SLC41A3",
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},
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],
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},
{
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"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
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"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "n.333-2929G>A",
"hgvs_p": null,
"transcript": "ENST00000514023.5",
"protein_id": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SLC41A3",
"gene_hgnc_id": 31046,
"hgvs_c": "c.427-2929G>A",
"hgvs_p": null,
"transcript": "XM_005247559.1",
"protein_id": "XP_005247616.1",
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