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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-13629276-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=13629276&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 13629276,
"ref": "T",
"alt": "C",
"effect": "synonymous_variant",
"transcript": "ENST00000404922.8",
"consequences": [
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FBLN2",
"gene_hgnc_id": 3601,
"hgvs_c": "c.2826T>C",
"hgvs_p": "p.Phe942Phe",
"transcript": "NM_001004019.2",
"protein_id": "NP_001004019.1",
"transcript_support_level": null,
"aa_start": 942,
"aa_end": null,
"aa_length": 1231,
"cds_start": 2826,
"cds_end": null,
"cds_length": 3696,
"cdna_start": 2951,
"cdna_end": null,
"cdna_length": 4306,
"mane_select": "ENST00000404922.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FBLN2",
"gene_hgnc_id": 3601,
"hgvs_c": "c.2826T>C",
"hgvs_p": "p.Phe942Phe",
"transcript": "ENST00000404922.8",
"protein_id": "ENSP00000384169.3",
"transcript_support_level": 5,
"aa_start": 942,
"aa_end": null,
"aa_length": 1231,
"cds_start": 2826,
"cds_end": null,
"cds_length": 3696,
"cdna_start": 2951,
"cdna_end": null,
"cdna_length": 4306,
"mane_select": "NM_001004019.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FBLN2",
"gene_hgnc_id": 3601,
"hgvs_c": "c.2685T>C",
"hgvs_p": "p.Phe895Phe",
"transcript": "ENST00000295760.11",
"protein_id": "ENSP00000295760.7",
"transcript_support_level": 1,
"aa_start": 895,
"aa_end": null,
"aa_length": 1184,
"cds_start": 2685,
"cds_end": null,
"cds_length": 3555,
"cdna_start": 2754,
"cdna_end": null,
"cdna_length": 4127,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FBLN2",
"gene_hgnc_id": 3601,
"hgvs_c": "c.2826T>C",
"hgvs_p": "p.Phe942Phe",
"transcript": "NM_001165035.2",
"protein_id": "NP_001158507.1",
"transcript_support_level": null,
"aa_start": 942,
"aa_end": null,
"aa_length": 1231,
"cds_start": 2826,
"cds_end": null,
"cds_length": 3696,
"cdna_start": 3208,
"cdna_end": null,
"cdna_length": 4563,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FBLN2",
"gene_hgnc_id": 3601,
"hgvs_c": "c.2826T>C",
"hgvs_p": "p.Phe942Phe",
"transcript": "ENST00000492059.5",
"protein_id": "ENSP00000420042.1",
"transcript_support_level": 2,
"aa_start": 942,
"aa_end": null,
"aa_length": 1231,
"cds_start": 2826,
"cds_end": null,
"cds_length": 3696,
"cdna_start": 3208,
"cdna_end": null,
"cdna_length": 4193,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FBLN2",
"gene_hgnc_id": 3601,
"hgvs_c": "c.2685T>C",
"hgvs_p": "p.Phe895Phe",
"transcript": "NM_001998.3",
"protein_id": "NP_001989.2",
"transcript_support_level": null,
"aa_start": 895,
"aa_end": null,
"aa_length": 1184,
"cds_start": 2685,
"cds_end": null,
"cds_length": 3555,
"cdna_start": 2810,
"cdna_end": null,
"cdna_length": 4165,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "FBLN2",
"gene_hgnc_id": 3601,
"dbsnp": "rs4684968",
"frequency_reference_population": 0.68252915,
"hom_count_reference_population": 379535,
"allele_count_reference_population": 1098947,
"gnomad_exomes_af": 0.679147,
"gnomad_genomes_af": 0.714927,
"gnomad_exomes_ac": 990128,
"gnomad_genomes_ac": 108819,
"gnomad_exomes_homalt": 340242,
"gnomad_genomes_homalt": 39293,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.5600000023841858,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0.029999999329447746,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.56,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.338,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.03,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -21,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BA1",
"acmg_by_gene": [
{
"score": -21,
"benign_score": 21,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BP7",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000404922.8",
"gene_symbol": "FBLN2",
"hgnc_id": 3601,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.2826T>C",
"hgvs_p": "p.Phe942Phe"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "B:2",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Benign",
"custom_annotations": null
}
],
"message": null
}