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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-172341331-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=172341331&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 172341331,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "NM_022763.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "NM_022763.4",
"protein_id": "NP_073600.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
"cds_end": null,
"cds_length": 3615,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000415807.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_022763.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000415807.7",
"protein_id": "ENSP00000411242.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
"cds_end": null,
"cds_length": 3615,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_022763.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000415807.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000336824.8",
"protein_id": "ENSP00000338523.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
"cds_end": null,
"cds_length": 3615,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000336824.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000416957.5",
"protein_id": "ENSP00000389094.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
"cds_end": null,
"cds_length": 3615,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000416957.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899168.1",
"protein_id": "ENSP00000569227.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1244,
"cds_start": null,
"cds_end": null,
"cds_length": 3735,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000899168.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000947479.1",
"protein_id": "ENSP00000617538.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1230,
"cds_start": null,
"cds_end": null,
"cds_length": 3693,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000947479.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "NM_001135095.2",
"protein_id": "NP_001128567.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
"cds_end": null,
"cds_length": 3615,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001135095.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899158.1",
"protein_id": "ENSP00000569217.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
"cds_end": null,
"cds_length": 3615,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000899158.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899162.1",
"protein_id": "ENSP00000569221.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
"cds_end": null,
"cds_length": 3615,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000899162.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899164.1",
"protein_id": "ENSP00000569223.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
"cds_end": null,
"cds_length": 3615,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000899164.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899165.1",
"protein_id": "ENSP00000569224.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000899165.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899166.1",
"protein_id": "ENSP00000569225.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000899166.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899173.1",
"protein_id": "ENSP00000569232.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000899173.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
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"transcript": "ENST00000899176.1",
"protein_id": "ENSP00000569235.1",
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"biotype": "protein_coding",
"feature": "ENST00000899176.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899178.1",
"protein_id": "ENSP00000569237.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000899178.1"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 18,
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"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
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"transcript": "ENST00000899179.1",
"protein_id": "ENSP00000569238.1",
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000899179.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899183.1",
"protein_id": "ENSP00000569242.1",
"transcript_support_level": null,
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"aa_end": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000899183.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899184.1",
"protein_id": "ENSP00000569243.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"biotype": "protein_coding",
"feature": "ENST00000899184.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
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"transcript": "ENST00000899186.1",
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"feature": "ENST00000899186.1"
},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899187.1",
"protein_id": "ENSP00000569246.1",
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"feature": "ENST00000899187.1"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000899188.1",
"protein_id": "ENSP00000569247.1",
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"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000899188.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FNDC3B",
"gene_hgnc_id": 24670,
"hgvs_c": "c.1971+100G>A",
"hgvs_p": null,
"transcript": "ENST00000926636.1",
"protein_id": "ENSP00000596695.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1204,
"cds_start": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000926636.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
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