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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-24387330-T-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=24387330&ref=T&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "3",
      "pos": 24387330,
      "ref": "T",
      "alt": "G",
      "effect": "intron_variant",
      "transcript": "ENST00000646209.2",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "THRB",
          "gene_hgnc_id": 11799,
          "hgvs_c": "c.-260-49959A>C",
          "hgvs_p": null,
          "transcript": "NM_001354712.2",
          "protein_id": "NP_001341641.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 461,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1386,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 7576,
          "mane_select": "ENST00000646209.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "THRB",
          "gene_hgnc_id": 11799,
          "hgvs_c": "c.-260-49959A>C",
          "hgvs_p": null,
          "transcript": "ENST00000646209.2",
          "protein_id": "ENSP00000496686.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 461,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1386,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 7576,
          "mane_select": "NM_001354712.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "THRB",
          "gene_hgnc_id": 11799,
          "hgvs_c": "c.-260-49959A>C",
          "hgvs_p": null,
          "transcript": "ENST00000356447.9",
          "protein_id": "ENSP00000348827.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 461,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1386,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6433,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "THRB",
          "gene_hgnc_id": 11799,
          "hgvs_c": "c.-252+42771A>C",
          "hgvs_p": null,
          "transcript": "ENST00000447875.5",
          "protein_id": "ENSP00000388467.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 121,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 366,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 754,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "THRB",
          "gene_hgnc_id": 11799,
          "hgvs_c": "c.-171-38716A>C",
          "hgvs_p": null,
          "transcript": "ENST00000453729.6",
          "protein_id": "ENSP00000414910.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 120,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 364,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 703,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "THRB",
          "gene_hgnc_id": 11799,
          "hgvs_c": "c.-114-49959A>C",
          "hgvs_p": null,
          "transcript": "ENST00000431815.5",
          "protein_id": "ENSP00000395362.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 113,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 343,
          "cdna_start": null,
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          "cdna_length": 568,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "THRB",
          "gene_hgnc_id": 11799,
          "hgvs_c": "c.-114-49959A>C",
          "hgvs_p": null,
          "transcript": "NM_000461.5",
          "protein_id": "NP_000452.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 461,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1386,
          "cdna_start": null,
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          "cdna_length": 7430,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "THRB",
          "gene_hgnc_id": 11799,
          "hgvs_c": "c.-260-49959A>C",
          "hgvs_p": null,
          "transcript": "NM_001128176.3",
          "protein_id": "NP_001121648.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 461,
          "cds_start": -4,
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          "cds_length": 1386,
          "cdna_start": null,
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          "cdna_length": 7541,
          "mane_select": null,
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        },
        {
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          "consequences": [
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          ],
          "exon_rank": null,
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          "gene_symbol": "THRB",
          "gene_hgnc_id": 11799,
          "hgvs_c": "c.-251-49959A>C",
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          "transcript": "NM_001128177.2",
          "protein_id": "NP_001121649.1",
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        {
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          "consequences": [
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          "intron_rank": 1,
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          "gene_symbol": "THRB",
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          "hgvs_c": "c.-349-49959A>C",
          "hgvs_p": null,
          "transcript": "NM_001252634.2",
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        {
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      "gene_symbol": "THRB",
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      "gnomad_exomes_af": null,
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      "gnomad_genomes_homalt": 16960,
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      "computational_score_selected": -0.8899999856948853,
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      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "bayesdelnoaf_score": -0.89,
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      "phylop100way_score": 0.402,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
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      "acmg_score": -12,
      "acmg_classification": "Benign",
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      "acmg_by_gene": [
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          "score": -12,
          "benign_score": 12,
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          "verdict": "Benign",
          "transcript": "ENST00000646209.2",
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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  ],
  "message": null
}