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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-33377930-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=33377930&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 33377930,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000484457.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "c.850-173C>T",
"hgvs_p": null,
"transcript": "NM_012157.5",
"protein_id": "NP_036289.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 423,
"cds_start": -4,
"cds_end": null,
"cds_length": 1272,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3827,
"mane_select": "ENST00000484457.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "c.850-173C>T",
"hgvs_p": null,
"transcript": "ENST00000484457.6",
"protein_id": "ENSP00000417601.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 423,
"cds_start": -4,
"cds_end": null,
"cds_length": 1272,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3827,
"mane_select": "NM_012157.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "c.850-173C>T",
"hgvs_p": null,
"transcript": "NM_001349316.2",
"protein_id": "NP_001336245.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 454,
"cds_start": -4,
"cds_end": null,
"cds_length": 1365,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3920,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "c.535-173C>T",
"hgvs_p": null,
"transcript": "NM_001349319.2",
"protein_id": "NP_001336248.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 349,
"cds_start": -4,
"cds_end": null,
"cds_length": 1050,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3937,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "c.535-173C>T",
"hgvs_p": null,
"transcript": "NM_001349320.2",
"protein_id": "NP_001336249.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 349,
"cds_start": -4,
"cds_end": null,
"cds_length": 1050,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3939,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "c.535-173C>T",
"hgvs_p": null,
"transcript": "NM_001349321.2",
"protein_id": "NP_001336250.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 349,
"cds_start": -4,
"cds_end": null,
"cds_length": 1050,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4033,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "c.598-173C>T",
"hgvs_p": null,
"transcript": "NM_001349322.2",
"protein_id": "NP_001336251.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 339,
"cds_start": -4,
"cds_end": null,
"cds_length": 1020,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3696,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "c.535-173C>T",
"hgvs_p": null,
"transcript": "NM_001349323.2",
"protein_id": "NP_001336252.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 318,
"cds_start": -4,
"cds_end": null,
"cds_length": 957,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3844,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "c.535-173C>T",
"hgvs_p": null,
"transcript": "NM_001349324.2",
"protein_id": "NP_001336253.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 318,
"cds_start": -4,
"cds_end": null,
"cds_length": 957,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3846,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "c.535-173C>T",
"hgvs_p": null,
"transcript": "NM_001349325.2",
"protein_id": "NP_001336254.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 318,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 3940,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "c.535-173C>T",
"hgvs_p": null,
"transcript": "NM_001349326.2",
"protein_id": "NP_001336255.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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},
{
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"canonical": false,
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 10,
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"gene_symbol": "FBXL2",
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"hgvs_c": "n.862-173C>T",
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"transcript": "ENST00000283627.10",
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},
{
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"strand": true,
"consequences": [
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],
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"intron_rank": 11,
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"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "n.*479-173C>T",
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"transcript": "ENST00000421391.5",
"protein_id": "ENSP00000408895.1",
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"aa_start": null,
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},
{
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"strand": true,
"consequences": [
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],
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"intron_rank": 9,
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"hgvs_c": "n.*628-173C>T",
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"transcript": "ENST00000422741.5",
"protein_id": "ENSP00000406737.1",
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},
{
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"strand": true,
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],
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"transcript": "ENST00000432809.5",
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},
{
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"strand": true,
"consequences": [
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],
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"exon_count": 17,
"intron_rank": 13,
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"gene_symbol": "FBXL2",
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"hgvs_c": "n.*889-173C>T",
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"transcript": "ENST00000435207.5",
"protein_id": "ENSP00000411484.1",
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},
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],
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"gene_symbol": "FBXL2",
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},
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"strand": true,
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],
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"intron_rank": 8,
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"gene_symbol": "FBXL2",
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"hgvs_c": "n.672-173C>T",
"hgvs_p": null,
"transcript": "ENST00000463736.5",
"protein_id": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 11,
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"gene_symbol": "FBXL2",
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"hgvs_c": "n.919-173C>T",
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},
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],
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},
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],
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},
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],
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"gene_symbol": "FBXL2",
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"hgvs_c": "n.940-173C>T",
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"feature": null
},
{
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"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 17,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "FBXL2",
"gene_hgnc_id": 13598,
"hgvs_c": "n.1015-173C>T",
"hgvs_p": null,
"transcript": "NR_146125.2",
"protein_id": null,
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},
{
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"protein_coding": false,
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"consequences": [
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],
"exon_rank": null,
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