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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-35759275-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=35759275&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 35759275,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000684406.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2137+15310T>C",
"hgvs_p": null,
"transcript": "NM_001385562.1",
"protein_id": "NP_001372491.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 847,
"cds_start": -4,
"cds_end": null,
"cds_length": 2544,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4158,
"mane_select": "ENST00000684406.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2137+15310T>C",
"hgvs_p": null,
"transcript": "ENST00000684406.1",
"protein_id": "ENSP00000506922.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 847,
"cds_start": -4,
"cds_end": null,
"cds_length": 2544,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4158,
"mane_select": "NM_001385562.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2032+15310T>C",
"hgvs_p": null,
"transcript": "ENST00000187397.8",
"protein_id": "ENSP00000187397.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 812,
"cds_start": -4,
"cds_end": null,
"cds_length": 2439,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3433,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.1975+15310T>C",
"hgvs_p": null,
"transcript": "ENST00000444190.5",
"protein_id": "ENSP00000405276.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 793,
"cds_start": -4,
"cds_end": null,
"cds_length": 2382,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3182,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "n.*380+15310T>C",
"hgvs_p": null,
"transcript": "ENST00000457165.5",
"protein_id": "ENSP00000412233.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2014,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2140+15310T>C",
"hgvs_p": null,
"transcript": "NM_001385595.1",
"protein_id": "NP_001372524.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 848,
"cds_start": -4,
"cds_end": null,
"cds_length": 2547,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3365,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2137+15310T>C",
"hgvs_p": null,
"transcript": "NM_001385490.1",
"protein_id": "NP_001372419.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 847,
"cds_start": -4,
"cds_end": null,
"cds_length": 2544,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3463,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2137+15310T>C",
"hgvs_p": null,
"transcript": "NM_001385592.1",
"protein_id": "NP_001372521.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 847,
"cds_start": -4,
"cds_end": null,
"cds_length": 2544,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3353,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2137+15310T>C",
"hgvs_p": null,
"transcript": "NM_001385593.1",
"protein_id": "NP_001372522.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 847,
"cds_start": -4,
"cds_end": null,
"cds_length": 2544,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3445,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2137+15310T>C",
"hgvs_p": null,
"transcript": "NM_001385594.1",
"protein_id": "NP_001372523.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 847,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 3362,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2134+15310T>C",
"hgvs_p": null,
"transcript": "NM_001385495.1",
"protein_id": "NP_001372424.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 21,
"intron_rank": 19,
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"gene_symbol": "ARPP21",
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"hgvs_c": "c.2134+15310T>C",
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"transcript": "NM_001385591.1",
"protein_id": "NP_001372520.1",
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 20,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2077+15310T>C",
"hgvs_p": null,
"transcript": "NM_001385558.1",
"protein_id": "NP_001372487.1",
"transcript_support_level": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 20,
"intron_rank": 18,
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"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2077+15310T>C",
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"transcript": "NM_001385567.1",
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},
{
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],
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"gene_symbol": "ARPP21",
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"hgvs_c": "c.2077+15310T>C",
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"transcript": "NM_001385589.1",
"protein_id": "NP_001372518.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 19,
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"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2077+15310T>C",
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"transcript": "NM_001385590.1",
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},
{
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],
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"gene_symbol": "ARPP21",
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"hgvs_c": "c.2035+15310T>C",
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"transcript": "NM_001267619.2",
"protein_id": "NP_001254548.1",
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},
{
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"protein_coding": true,
"strand": true,
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],
"exon_rank": null,
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"exon_count": 20,
"intron_rank": 18,
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"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2035+15310T>C",
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"transcript": "NM_001385484.1",
"protein_id": "NP_001372413.1",
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},
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"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "ARPP21",
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"hgvs_c": "c.2035+15310T>C",
"hgvs_p": null,
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},
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],
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"gene_symbol": "ARPP21",
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},
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],
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
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"exon_count": 21,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2035+15310T>C",
"hgvs_p": null,
"transcript": "NM_001385564.1",
"protein_id": "NP_001372493.1",
"transcript_support_level": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 19,
"intron_rank": 17,
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"gene_symbol": "ARPP21",
"gene_hgnc_id": 16968,
"hgvs_c": "c.2035+15310T>C",
"hgvs_p": null,
"transcript": "NM_001385587.1",
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}