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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-52684264-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=52684264&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 52684264,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000707071.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-16+1485C>G",
"hgvs_p": null,
"transcript": "ENST00000707071.1",
"protein_id": "ENSP00000516722.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1704,
"cds_start": -4,
"cds_end": null,
"cds_length": 5115,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7991,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-13+1485C>G",
"hgvs_p": null,
"transcript": "ENST00000394830.7",
"protein_id": "ENSP00000378307.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1582,
"cds_start": -4,
"cds_end": null,
"cds_length": 4749,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5071,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-2251C>G",
"hgvs_p": null,
"transcript": "XM_047448442.1",
"protein_id": "XP_047304398.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1734,
"cds_start": -4,
"cds_end": null,
"cds_length": 5205,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10967,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-2251C>G",
"hgvs_p": null,
"transcript": "XM_047448443.1",
"protein_id": "XP_047304399.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1733,
"cds_start": -4,
"cds_end": null,
"cds_length": 5202,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10964,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-2251C>G",
"hgvs_p": null,
"transcript": "XM_047448444.1",
"protein_id": "XP_047304400.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1730,
"cds_start": -4,
"cds_end": null,
"cds_length": 5193,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10955,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-2251C>G",
"hgvs_p": null,
"transcript": "XM_047448446.1",
"protein_id": "XP_047304402.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1725,
"cds_start": -4,
"cds_end": null,
"cds_length": 5178,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10940,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-2251C>G",
"hgvs_p": null,
"transcript": "XM_047448448.1",
"protein_id": "XP_047304404.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1724,
"cds_start": -4,
"cds_end": null,
"cds_length": 5175,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10937,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-2251C>G",
"hgvs_p": null,
"transcript": "XM_047448450.1",
"protein_id": "XP_047304406.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1709,
"cds_start": -4,
"cds_end": null,
"cds_length": 5130,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10892,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-2251C>G",
"hgvs_p": null,
"transcript": "XM_047448451.1",
"protein_id": "XP_047304407.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1708,
"cds_start": -4,
"cds_end": null,
"cds_length": 5127,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10889,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-2251C>G",
"hgvs_p": null,
"transcript": "XM_047448456.1",
"protein_id": "XP_047304412.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1700,
"cds_start": -4,
"cds_end": null,
"cds_length": 5103,
"cdna_start": null,
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"cdna_length": 10865,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-13+1485C>G",
"hgvs_p": null,
"transcript": "NM_001405601.1",
"protein_id": "NP_001392530.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 32,
"intron_rank": 1,
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"gene_symbol": "PBRM1",
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"hgvs_c": "c.-16+1485C>G",
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"transcript": "NM_001405607.1",
"protein_id": "NP_001392536.1",
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 31,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-16+1485C>G",
"hgvs_p": null,
"transcript": "NM_001405598.1",
"protein_id": "NP_001392527.1",
"transcript_support_level": null,
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"feature": null
},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-13+1485C>G",
"hgvs_p": null,
"transcript": "NM_001405570.1",
"protein_id": "NP_001392499.1",
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},
{
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],
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"intron_rank": 1,
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"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-158+1485C>G",
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"transcript": "NM_001394867.1",
"protein_id": "NP_001381796.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "PBRM1",
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"hgvs_c": "c.-13+1485C>G",
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"transcript": "NM_001394868.1",
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},
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],
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"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-158+1172C>G",
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"transcript": "NM_001394869.1",
"protein_id": "NP_001381798.1",
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},
{
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],
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"intron_rank": 1,
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"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-16+1485C>G",
"hgvs_p": null,
"transcript": "NM_001400470.1",
"protein_id": "NP_001387399.1",
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},
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],
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"gene_symbol": "PBRM1",
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"hgvs_c": "c.-16+1626C>G",
"hgvs_p": null,
"transcript": "NM_001405581.1",
"protein_id": "NP_001392510.1",
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},
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],
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"gene_symbol": "PBRM1",
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},
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"protein_coding": true,
"strand": false,
"consequences": [
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],
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"exon_count": 32,
"intron_rank": 1,
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"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-158+1485C>G",
"hgvs_p": null,
"transcript": "NM_001405567.1",
"protein_id": "NP_001392496.1",
"transcript_support_level": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 31,
"intron_rank": 1,
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"gene_symbol": "PBRM1",
"gene_hgnc_id": 30064,
"hgvs_c": "c.-16+1485C>G",
"hgvs_p": null,
"transcript": "NM_001405589.1",
"protein_id": "NP_001392518.1",
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