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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 4-153324116-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=153324116&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "4",
      "pos": 153324116,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "ENST00000338700.10",
      "consequences": [
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
          "hgvs_c": "c.1990A>G",
          "hgvs_p": "p.Ile664Val",
          "transcript": "NM_015271.5",
          "protein_id": "NP_056086.2",
          "transcript_support_level": null,
          "aa_start": 664,
          "aa_end": null,
          "aa_length": 771,
          "cds_start": 1990,
          "cds_end": null,
          "cds_length": 2316,
          "cdna_start": 2078,
          "cdna_end": null,
          "cdna_length": 6755,
          "mane_select": "ENST00000338700.10",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
          "hgvs_c": "c.1990A>G",
          "hgvs_p": "p.Ile664Val",
          "transcript": "ENST00000338700.10",
          "protein_id": "ENSP00000339659.5",
          "transcript_support_level": 1,
          "aa_start": 664,
          "aa_end": null,
          "aa_length": 771,
          "cds_start": 1990,
          "cds_end": null,
          "cds_length": 2316,
          "cdna_start": 2078,
          "cdna_end": null,
          "cdna_length": 6755,
          "mane_select": "NM_015271.5",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000288637",
          "gene_hgnc_id": null,
          "hgvs_c": "c.1909A>G",
          "hgvs_p": "p.Ile637Val",
          "transcript": "ENST00000675838.1",
          "protein_id": "ENSP00000501593.1",
          "transcript_support_level": null,
          "aa_start": 637,
          "aa_end": null,
          "aa_length": 898,
          "cds_start": 1909,
          "cds_end": null,
          "cds_length": 2697,
          "cdna_start": 2079,
          "cdna_end": null,
          "cdna_length": 3066,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
          "hgvs_c": "c.1909A>G",
          "hgvs_p": "p.Ile637Val",
          "transcript": "ENST00000437508.7",
          "protein_id": "ENSP00000415812.2",
          "transcript_support_level": 1,
          "aa_start": 637,
          "aa_end": null,
          "aa_length": 744,
          "cds_start": 1909,
          "cds_end": null,
          "cds_length": 2235,
          "cdna_start": 2110,
          "cdna_end": null,
          "cdna_length": 3828,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
          "hgvs_c": "c.1909A>G",
          "hgvs_p": "p.Ile637Val",
          "transcript": "ENST00000494872.6",
          "protein_id": "ENSP00000488229.2",
          "transcript_support_level": 1,
          "aa_start": 637,
          "aa_end": null,
          "aa_length": 681,
          "cds_start": 1909,
          "cds_end": null,
          "cds_length": 2046,
          "cdna_start": 2078,
          "cdna_end": null,
          "cdna_length": 2452,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000288637",
          "gene_hgnc_id": null,
          "hgvs_c": "c.1921A>G",
          "hgvs_p": "p.Ile641Val",
          "transcript": "ENST00000675079.1",
          "protein_id": "ENSP00000502677.1",
          "transcript_support_level": null,
          "aa_start": 641,
          "aa_end": null,
          "aa_length": 902,
          "cds_start": 1921,
          "cds_end": null,
          "cds_length": 2709,
          "cdna_start": 2950,
          "cdna_end": null,
          "cdna_length": 3962,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000288637",
          "gene_hgnc_id": null,
          "hgvs_c": "c.1909A>G",
          "hgvs_p": "p.Ile637Val",
          "transcript": "ENST00000674967.1",
          "protein_id": "ENSP00000501627.1",
          "transcript_support_level": null,
          "aa_start": 637,
          "aa_end": null,
          "aa_length": 898,
          "cds_start": 1909,
          "cds_end": null,
          "cds_length": 2697,
          "cdna_start": 2075,
          "cdna_end": null,
          "cdna_length": 2981,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
          "hgvs_c": "c.2083A>G",
          "hgvs_p": "p.Ile695Val",
          "transcript": "NM_001375488.1",
          "protein_id": "NP_001362417.1",
          "transcript_support_level": null,
          "aa_start": 695,
          "aa_end": null,
          "aa_length": 802,
          "cds_start": 2083,
          "cds_end": null,
          "cds_length": 2409,
          "cdna_start": 2171,
          "cdna_end": null,
          "cdna_length": 6848,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
          "hgvs_c": "c.2080A>G",
          "hgvs_p": "p.Ile694Val",
          "transcript": "NM_001375489.1",
          "protein_id": "NP_001362418.1",
          "transcript_support_level": null,
          "aa_start": 694,
          "aa_end": null,
          "aa_length": 801,
          "cds_start": 2080,
          "cds_end": null,
          "cds_length": 2406,
          "cdna_start": 2168,
          "cdna_end": null,
          "cdna_length": 6845,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
          "hgvs_c": "c.2068A>G",
          "hgvs_p": "p.Ile690Val",
          "transcript": "ENST00000674847.1",
          "protein_id": "ENSP00000501983.1",
          "transcript_support_level": null,
          "aa_start": 690,
          "aa_end": null,
          "aa_length": 797,
          "cds_start": 2068,
          "cds_end": null,
          "cds_length": 2394,
          "cdna_start": 2305,
          "cdna_end": null,
          "cdna_length": 6967,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000288637",
          "gene_hgnc_id": null,
          "hgvs_c": "c.1576A>G",
          "hgvs_p": "p.Ile526Val",
          "transcript": "ENST00000675518.1",
          "protein_id": "ENSP00000501852.1",
          "transcript_support_level": null,
          "aa_start": 526,
          "aa_end": null,
          "aa_length": 787,
          "cds_start": 1576,
          "cds_end": null,
          "cds_length": 2364,
          "cdna_start": 1805,
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          "cdna_length": 2691,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
          "hgvs_c": "c.2002A>G",
          "hgvs_p": "p.Ile668Val",
          "transcript": "NM_001438618.1",
          "protein_id": "NP_001425547.1",
          "transcript_support_level": null,
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          "cds_start": 2002,
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          "mane_select": null,
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        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
          "hgvs_c": "c.2002A>G",
          "hgvs_p": "p.Ile668Val",
          "transcript": "ENST00000675063.1",
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        {
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          "intron_rank": null,
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          "gene_symbol": "TRIM2",
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          "hgvs_c": "c.2002A>G",
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          "transcript": "ENST00000675673.1",
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        {
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        {
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          "intron_rank": null,
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          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
          "hgvs_c": "c.1987A>G",
          "hgvs_p": "p.Ile663Val",
          "transcript": "NM_001438620.1",
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        {
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          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
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          "hgvs_p": "p.Ile659Val",
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        {
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        {
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          "intron_rank": null,
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          "gene_symbol": "TRIM2",
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        },
        {
          "aa_ref": "I",
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            "missense_variant"
          ],
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          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM2",
          "gene_hgnc_id": 15974,
          "hgvs_c": "c.1972A>G",
          "hgvs_p": "p.Ile658Val",
          "transcript": "ENST00000674726.1",
          "protein_id": "ENSP00000502266.1",
          "transcript_support_level": null,
          "aa_start": 658,
          "aa_end": null,
          "aa_length": 765,
          "cds_start": 1972,
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          "cds_length": 2298,
          "cdna_start": 2198,
          "cdna_end": null,
          "cdna_length": 6860,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
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      "computational_source_selected": "MetaRNN",
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      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Benign",
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      "bayesdelnoaf_score": -0.31,
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      "phylop100way_score": 5.962,
      "phylop100way_prediction": "Uncertain_significance",
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      "spliceai_max_prediction": "Benign",
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      "acmg_classification": "Likely_benign",
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      "acmg_by_gene": [
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          "verdict": "Likely_benign",
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        {
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      "clinvar_disease": "Charcot-Marie-Tooth disease type 2R,not provided",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "US:3",
      "phenotype_combined": "Charcot-Marie-Tooth disease type 2R|not provided",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
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  "message": null
}