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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 4-185601799-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=185601799&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "4",
"pos": 185601799,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000695409.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 24,
"intron_rank_end": null,
"gene_symbol": "SORBS2",
"gene_hgnc_id": 24098,
"hgvs_c": "c.3685-7864G>A",
"hgvs_p": null,
"transcript": "NM_001395207.1",
"protein_id": "NP_001382136.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1300,
"cds_start": -4,
"cds_end": null,
"cds_length": 3903,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6774,
"mane_select": "ENST00000695409.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 24,
"intron_rank_end": null,
"gene_symbol": "SORBS2",
"gene_hgnc_id": 24098,
"hgvs_c": "c.3685-7864G>A",
"hgvs_p": null,
"transcript": "ENST00000695409.1",
"protein_id": "ENSP00000511888.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1300,
"cds_start": -4,
"cds_end": null,
"cds_length": 3903,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6774,
"mane_select": "NM_001395207.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "SORBS2",
"gene_hgnc_id": 24098,
"hgvs_c": "c.3085-7864G>A",
"hgvs_p": null,
"transcript": "ENST00000284776.11",
"protein_id": "ENSP00000284776.7",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1100,
"cds_start": -4,
"cds_end": null,
"cds_length": 3303,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5996,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "SORBS2",
"gene_hgnc_id": 24098,
"hgvs_c": "c.2257-7864G>A",
"hgvs_p": null,
"transcript": "ENST00000437304.6",
"protein_id": "ENSP00000396008.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 824,
"cds_start": -4,
"cds_end": null,
"cds_length": 2475,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3381,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "SORBS2",
"gene_hgnc_id": 24098,
"hgvs_c": "c.1978-7864G>A",
"hgvs_p": null,
"transcript": "ENST00000319471.13",
"protein_id": "ENSP00000322182.9",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 731,
"cds_start": -4,
"cds_end": null,
"cds_length": 2196,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2824,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "SORBS2",
"gene_hgnc_id": 24098,
"hgvs_c": "c.1783-7864G>A",
"hgvs_p": null,
"transcript": "ENST00000393528.7",
"protein_id": "ENSP00000377162.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 666,
"cds_start": -4,
"cds_end": null,
"cds_length": 2001,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3043,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "SORBS2",
"gene_hgnc_id": 24098,
"hgvs_c": "c.1717-7864G>A",
"hgvs_p": null,
"transcript": "ENST00000449407.6",
"protein_id": "ENSP00000397262.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 644,
"cds_start": -4,
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"cds_length": 1935,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3049,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "SORBS2",
"gene_hgnc_id": 24098,
"hgvs_c": "c.1858-7864G>A",
"hgvs_p": null,
"transcript": "ENST00000319454.10",
"protein_id": "ENSP00000321983.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 635,
"cds_start": -4,
"cds_end": null,
"cds_length": 1909,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2011,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "SORBS2",
"gene_hgnc_id": 24098,
"hgvs_c": "n.*2088-7864G>A",
"hgvs_p": null,
"transcript": "ENST00000487184.2",
"protein_id": "ENSP00000511890.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4452,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 22,
"intron_rank_end": null,
"gene_symbol": "SORBS2",
"gene_hgnc_id": 24098,
"hgvs_c": "c.4501-7864G>A",
"hgvs_p": null,
"transcript": "ENST00000421420.6",
"protein_id": "ENSP00000393258.2",
"transcript_support_level": 4,
"aa_start": null,
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"aa_length": 1572,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 22,
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"gene_symbol": "SORBS2",
"gene_hgnc_id": 24098,
"hgvs_c": "c.3643-7864G>A",
"hgvs_p": null,
"transcript": "NM_001394245.1",
"protein_id": "NP_001381174.1",
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},
{
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],
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"gene_symbol": "SORBS2",
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"transcript": "NM_001394246.1",
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},
{
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],
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"gene_symbol": "SORBS2",
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"hgvs_c": "c.3586-7864G>A",
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"transcript": "NM_001394247.1",
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},
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],
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"gene_symbol": "SORBS2",
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"hgvs_c": "c.3517-7864G>A",
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},
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],
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"gene_symbol": "SORBS2",
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"hgvs_c": "c.3517-7864G>A",
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"transcript": "NM_001394249.1",
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},
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],
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"gene_symbol": "SORBS2",
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},
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],
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"gene_symbol": "SORBS2",
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"hgvs_c": "c.3385-7864G>A",
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"transcript": "NM_001270771.3",
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},
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],
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"gene_symbol": "SORBS2",
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"hgvs_c": "c.3385-7864G>A",
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"protein_id": "NP_001381180.1",
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},
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"gene_symbol": "SORBS2",
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},
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],
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"gene_symbol": "SORBS2",
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"hgvs_c": "c.3385-7864G>A",
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"transcript": "ENST00000355634.9",
"protein_id": "ENSP00000347852.5",
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},
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"strand": false,
"consequences": [
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],
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"intron_rank": 21,
"intron_rank_end": null,
"gene_symbol": "SORBS2",
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"hgvs_c": "c.3385-7864G>A",
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