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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 4-6301092-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=6301092&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "4",
"pos": 6301092,
"ref": "G",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_006005.3",
"consequences": [
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro",
"transcript": "NM_006005.3",
"protein_id": "NP_005996.2",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 890,
"cds_start": 1297,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1467,
"cdna_end": null,
"cdna_length": 3640,
"mane_select": "ENST00000226760.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_006005.3"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro",
"transcript": "ENST00000226760.5",
"protein_id": "ENSP00000226760.1",
"transcript_support_level": 1,
"aa_start": 433,
"aa_end": null,
"aa_length": 890,
"cds_start": 1297,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1467,
"cdna_end": null,
"cdna_length": 3640,
"mane_select": "NM_006005.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000226760.5"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro",
"transcript": "ENST00000503569.5",
"protein_id": "ENSP00000423337.1",
"transcript_support_level": 1,
"aa_start": 433,
"aa_end": null,
"aa_length": 890,
"cds_start": 1297,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1464,
"cdna_end": null,
"cdna_length": 3255,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000503569.5"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1390G>C",
"hgvs_p": "p.Ala464Pro",
"transcript": "ENST00000852027.1",
"protein_id": "ENSP00000522086.1",
"transcript_support_level": null,
"aa_start": 464,
"aa_end": null,
"aa_length": 921,
"cds_start": 1390,
"cds_end": null,
"cds_length": 2766,
"cdna_start": 1553,
"cdna_end": null,
"cdna_length": 3726,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852027.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1333G>C",
"hgvs_p": "p.Ala445Pro",
"transcript": "ENST00000673991.1",
"protein_id": "ENSP00000501033.1",
"transcript_support_level": null,
"aa_start": 445,
"aa_end": null,
"aa_length": 902,
"cds_start": 1333,
"cds_end": null,
"cds_length": 2709,
"cdna_start": 1500,
"cdna_end": null,
"cdna_length": 3633,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000673991.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1333G>C",
"hgvs_p": "p.Ala445Pro",
"transcript": "ENST00000682275.1",
"protein_id": "ENSP00000507852.1",
"transcript_support_level": null,
"aa_start": 445,
"aa_end": null,
"aa_length": 902,
"cds_start": 1333,
"cds_end": null,
"cds_length": 2709,
"cdna_start": 1503,
"cdna_end": null,
"cdna_length": 3662,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000682275.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1333G>C",
"hgvs_p": "p.Ala445Pro",
"transcript": "ENST00000852029.1",
"protein_id": "ENSP00000522088.1",
"transcript_support_level": null,
"aa_start": 445,
"aa_end": null,
"aa_length": 902,
"cds_start": 1333,
"cds_end": null,
"cds_length": 2709,
"cdna_start": 1410,
"cdna_end": null,
"cdna_length": 3583,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852029.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1333G>C",
"hgvs_p": "p.Ala445Pro",
"transcript": "ENST00000956586.1",
"protein_id": "ENSP00000626645.1",
"transcript_support_level": null,
"aa_start": 445,
"aa_end": null,
"aa_length": 902,
"cds_start": 1333,
"cds_end": null,
"cds_length": 2709,
"cdna_start": 1392,
"cdna_end": null,
"cdna_length": 3565,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956586.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro",
"transcript": "NM_001145853.1",
"protein_id": "NP_001139325.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 890,
"cds_start": 1297,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1463,
"cdna_end": null,
"cdna_length": 3636,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001145853.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro",
"transcript": "ENST00000684087.1",
"protein_id": "ENSP00000506978.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 890,
"cds_start": 1297,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1444,
"cdna_end": null,
"cdna_length": 3602,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000684087.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro",
"transcript": "ENST00000852028.1",
"protein_id": "ENSP00000522087.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 890,
"cds_start": 1297,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1392,
"cdna_end": null,
"cdna_length": 3565,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852028.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro",
"transcript": "ENST00000938521.1",
"protein_id": "ENSP00000608580.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 890,
"cds_start": 1297,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1385,
"cdna_end": null,
"cdna_length": 3173,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000938521.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro",
"transcript": "ENST00000956579.1",
"protein_id": "ENSP00000626638.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 890,
"cds_start": 1297,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1558,
"cdna_end": null,
"cdna_length": 3729,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956579.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro",
"transcript": "ENST00000956583.1",
"protein_id": "ENSP00000626642.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 890,
"cds_start": 1297,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1337,
"cdna_end": null,
"cdna_length": 3510,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956583.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro",
"transcript": "ENST00000956584.1",
"protein_id": "ENSP00000626643.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 890,
"cds_start": 1297,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1409,
"cdna_end": null,
"cdna_length": 3581,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956584.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro",
"transcript": "ENST00000956585.1",
"protein_id": "ENSP00000626644.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 890,
"cds_start": 1297,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1421,
"cdna_end": null,
"cdna_length": 3593,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956585.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1288G>C",
"hgvs_p": "p.Ala430Pro",
"transcript": "ENST00000938520.1",
"protein_id": "ENSP00000608579.1",
"transcript_support_level": null,
"aa_start": 430,
"aa_end": null,
"aa_length": 887,
"cds_start": 1288,
"cds_end": null,
"cds_length": 2664,
"cdna_start": 1469,
"cdna_end": null,
"cdna_length": 3257,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000938520.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1252G>C",
"hgvs_p": "p.Ala418Pro",
"transcript": "ENST00000956581.1",
"protein_id": "ENSP00000626640.1",
"transcript_support_level": null,
"aa_start": 418,
"aa_end": null,
"aa_length": 875,
"cds_start": 1252,
"cds_end": null,
"cds_length": 2628,
"cdna_start": 1390,
"cdna_end": null,
"cdna_length": 3553,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956581.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1216G>C",
"hgvs_p": "p.Ala406Pro",
"transcript": "ENST00000852030.1",
"protein_id": "ENSP00000522089.1",
"transcript_support_level": null,
"aa_start": 406,
"aa_end": null,
"aa_length": 863,
"cds_start": 1216,
"cds_end": null,
"cds_length": 2592,
"cdna_start": 1363,
"cdna_end": null,
"cdna_length": 3154,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852030.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1216G>C",
"hgvs_p": "p.Ala406Pro",
"transcript": "ENST00000956580.1",
"protein_id": "ENSP00000626639.1",
"transcript_support_level": null,
"aa_start": 406,
"aa_end": null,
"aa_length": 863,
"cds_start": 1216,
"cds_end": null,
"cds_length": 2592,
"cdna_start": 1352,
"cdna_end": null,
"cdna_length": 3525,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956580.1"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1048G>C",
"hgvs_p": "p.Ala350Pro",
"transcript": "ENST00000506362.2",
"protein_id": "ENSP00000424103.2",
"transcript_support_level": 3,
"aa_start": 350,
"aa_end": null,
"aa_length": 807,
"cds_start": 1048,
"cds_end": null,
"cds_length": 2424,
"cdna_start": 1103,
"cdna_end": null,
"cdna_length": 2882,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000506362.2"
},
{
"aa_ref": "A",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WFS1",
"gene_hgnc_id": 12762,
"hgvs_c": "c.1045G>C",
"hgvs_p": "p.Ala349Pro",
"transcript": "ENST00000956582.1",
"protein_id": "ENSP00000626641.1",
"transcript_support_level": null,
"aa_start": 349,
"aa_end": null,
"aa_length": 806,
"cds_start": 1045,
"cds_end": null,
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{
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{
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{
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],
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{
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],
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{
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],
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"biotype": "pseudogene",
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],
"gene_symbol": "WFS1",
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"dbsnp": "rs138771366",
"frequency_reference_population": 6.8414613e-7,
"hom_count_reference_population": 0,
"allele_count_reference_population": 1,
"gnomad_exomes_af": 6.84146e-7,
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"gnomad_exomes_ac": 1,
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"gnomad_exomes_homalt": 0,
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"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.9027373790740967,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.805,
"revel_prediction": "Pathogenic",
"alphamissense_score": 0.9902,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.33,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 4.888,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 7,
"acmg_classification": "Likely_pathogenic",
"acmg_criteria": "PM1,PM2,PP3_Moderate,PP5",
"acmg_by_gene": [
{
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"benign_score": 0,
"pathogenic_score": 7,
"criteria": [
"PM1",
"PM2",
"PP3_Moderate",
"PP5"
],
"verdict": "Likely_pathogenic",
"transcript": "NM_006005.3",
"gene_symbol": "WFS1",
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"effects": [
"missense_variant"
],
"inheritance_mode": "AD,AR,Unknown",
"hgvs_c": "c.1297G>C",
"hgvs_p": "p.Ala433Pro"
},
{
"score": 5,
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"pathogenic_score": 5,
"criteria": [
"PM2",
"PP3_Moderate",
"PP5"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000661896.1",
"gene_symbol": "ENSG00000286176",
"hgnc_id": 58722,
"effects": [
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],
"inheritance_mode": "",
"hgvs_c": "n.1337+2823C>G",
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}
],
"clinvar_disease": "Optic atrophy",
"clinvar_classification": "Likely pathogenic",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "null",
"phenotype_combined": "Optic atrophy",
"pathogenicity_classification_combined": "Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}