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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 4-69594610-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=69594610&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "4",
"pos": 69594610,
"ref": "C",
"alt": "A",
"effect": "missense_variant",
"transcript": "ENST00000604629.6",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A2",
"gene_hgnc_id": 28183,
"hgvs_c": "c.1198G>T",
"hgvs_p": "p.Val400Phe",
"transcript": "NM_001105677.2",
"protein_id": "NP_001099147.2",
"transcript_support_level": null,
"aa_start": 400,
"aa_end": null,
"aa_length": 536,
"cds_start": 1198,
"cds_end": null,
"cds_length": 1611,
"cdna_start": 1200,
"cdna_end": null,
"cdna_length": 2568,
"mane_select": "ENST00000604629.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A2",
"gene_hgnc_id": 28183,
"hgvs_c": "c.1198G>T",
"hgvs_p": "p.Val400Phe",
"transcript": "ENST00000604629.6",
"protein_id": "ENSP00000475028.2",
"transcript_support_level": 1,
"aa_start": 400,
"aa_end": null,
"aa_length": 536,
"cds_start": 1198,
"cds_end": null,
"cds_length": 1611,
"cdna_start": 1200,
"cdna_end": null,
"cdna_length": 2568,
"mane_select": "NM_001105677.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A1",
"gene_hgnc_id": 12542,
"hgvs_c": "c.1171G>T",
"hgvs_p": "p.Val391Phe",
"transcript": "NM_001252275.3",
"protein_id": "NP_001239204.2",
"transcript_support_level": null,
"aa_start": 391,
"aa_end": null,
"aa_length": 527,
"cds_start": 1171,
"cds_end": null,
"cds_length": 1584,
"cdna_start": 1285,
"cdna_end": null,
"cdna_length": 2653,
"mane_select": "ENST00000286604.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A1",
"gene_hgnc_id": 12542,
"hgvs_c": "c.1171G>T",
"hgvs_p": "p.Val391Phe",
"transcript": "ENST00000286604.9",
"protein_id": "ENSP00000286604.4",
"transcript_support_level": 1,
"aa_start": 391,
"aa_end": null,
"aa_length": 527,
"cds_start": 1171,
"cds_end": null,
"cds_length": 1584,
"cdna_start": 1285,
"cdna_end": null,
"cdna_length": 2653,
"mane_select": "NM_001252275.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A1",
"gene_hgnc_id": 12542,
"hgvs_c": "c.1171G>T",
"hgvs_p": "p.Val391Phe",
"transcript": "ENST00000503640.5",
"protein_id": "ENSP00000424478.1",
"transcript_support_level": 1,
"aa_start": 391,
"aa_end": null,
"aa_length": 527,
"cds_start": 1171,
"cds_end": null,
"cds_length": 1584,
"cdna_start": 1227,
"cdna_end": null,
"cdna_length": 2595,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A2",
"gene_hgnc_id": 28183,
"hgvs_c": "c.1066G>T",
"hgvs_p": "p.Val356Phe",
"transcript": "ENST00000604021.1",
"protein_id": "ENSP00000474383.2",
"transcript_support_level": 1,
"aa_start": 356,
"aa_end": null,
"aa_length": 492,
"cds_start": 1066,
"cds_end": null,
"cds_length": 1479,
"cdna_start": 1068,
"cdna_end": null,
"cdna_length": 1544,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A1",
"gene_hgnc_id": 12542,
"hgvs_c": "c.1039G>T",
"hgvs_p": "p.Val347Phe",
"transcript": "ENST00000512704.5",
"protein_id": "ENSP00000421432.1",
"transcript_support_level": 1,
"aa_start": 347,
"aa_end": null,
"aa_length": 483,
"cds_start": 1039,
"cds_end": null,
"cds_length": 1452,
"cdna_start": 1156,
"cdna_end": null,
"cdna_length": 2519,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A1",
"gene_hgnc_id": 12542,
"hgvs_c": "c.1801G>T",
"hgvs_p": "p.Val601Phe",
"transcript": "NM_001389565.1",
"protein_id": "NP_001376494.1",
"transcript_support_level": null,
"aa_start": 601,
"aa_end": null,
"aa_length": 737,
"cds_start": 1801,
"cds_end": null,
"cds_length": 2214,
"cdna_start": 1915,
"cdna_end": null,
"cdna_length": 3283,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A1",
"gene_hgnc_id": 12542,
"hgvs_c": "c.1669G>T",
"hgvs_p": "p.Val557Phe",
"transcript": "NM_001252274.3",
"protein_id": "NP_001239203.2",
"transcript_support_level": null,
"aa_start": 557,
"aa_end": null,
"aa_length": 693,
"cds_start": 1669,
"cds_end": null,
"cds_length": 2082,
"cdna_start": 1783,
"cdna_end": null,
"cdna_length": 3151,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A1",
"gene_hgnc_id": 12542,
"hgvs_c": "c.1669G>T",
"hgvs_p": "p.Val557Phe",
"transcript": "ENST00000514019.1",
"protein_id": "ENSP00000425497.1",
"transcript_support_level": 2,
"aa_start": 557,
"aa_end": null,
"aa_length": 693,
"cds_start": 1669,
"cds_end": null,
"cds_length": 2082,
"cdna_start": 1785,
"cdna_end": null,
"cdna_length": 2376,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A1",
"gene_hgnc_id": 12542,
"hgvs_c": "c.1171G>T",
"hgvs_p": "p.Val391Phe",
"transcript": "NM_006798.5",
"protein_id": "NP_006789.3",
"transcript_support_level": null,
"aa_start": 391,
"aa_end": null,
"aa_length": 527,
"cds_start": 1171,
"cds_end": null,
"cds_length": 1584,
"cdna_start": 1285,
"cdna_end": null,
"cdna_length": 2653,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A2",
"gene_hgnc_id": 28183,
"hgvs_c": "c.1066G>T",
"hgvs_p": "p.Val356Phe",
"transcript": "NM_001301233.1",
"protein_id": "NP_001288162.1",
"transcript_support_level": null,
"aa_start": 356,
"aa_end": null,
"aa_length": 492,
"cds_start": 1066,
"cds_end": null,
"cds_length": 1479,
"cdna_start": 1068,
"cdna_end": null,
"cdna_length": 2436,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A1",
"gene_hgnc_id": 12542,
"hgvs_c": "c.1039G>T",
"hgvs_p": "p.Val347Phe",
"transcript": "NM_001301239.2",
"protein_id": "NP_001288168.1",
"transcript_support_level": null,
"aa_start": 347,
"aa_end": null,
"aa_length": 483,
"cds_start": 1039,
"cds_end": null,
"cds_length": 1452,
"cdna_start": 1153,
"cdna_end": null,
"cdna_length": 2521,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UGT2A1",
"gene_hgnc_id": 12542,
"hgvs_c": "n.396G>T",
"hgvs_p": null,
"transcript": "ENST00000502343.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 574,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "UGT2A2",
"gene_hgnc_id": 28183,
"dbsnp": "rs4148304",
"frequency_reference_population": 0.000001368137,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 0.00000136814,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 2,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.27908891439437866,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.202,
"revel_prediction": "Benign",
"alphamissense_score": 0.2025,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.33,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.204,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 1,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4",
"acmg_by_gene": [
{
"score": 1,
"benign_score": 1,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000604629.6",
"gene_symbol": "UGT2A2",
"hgnc_id": 28183,
"effects": [
"missense_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.1198G>T",
"hgvs_p": "p.Val400Phe"
},
{
"score": 1,
"benign_score": 1,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000286604.9",
"gene_symbol": "UGT2A1",
"hgnc_id": 12542,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1171G>T",
"hgvs_p": "p.Val391Phe"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}