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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-132638214-TGGACAAAAGGCA-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=132638214&ref=TGGACAAAAGGCA&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 132638214,
"ref": "TGGACAAAAGGCA",
"alt": "T",
"effect": "frameshift_variant,splice_donor_variant,splice_region_variant,intron_variant",
"transcript": "ENST00000378823.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.229_240delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000458509.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 407,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAD50",
"gene_hgnc_id": 9816,
"hgvs_c": "n.*3238_*3244+5delACAAAAGGCAGG",
"hgvs_p": null,
"transcript": "ENST00000533482.5",
"protein_id": "ENSP00000431225.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4373,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "GQK",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant",
"splice_donor_variant",
"splice_region_variant",
"intron_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAD50",
"gene_hgnc_id": 9816,
"hgvs_c": "c.3612_3618+5delACAAAAGGCAGG",
"hgvs_p": "p.Gln1205fs",
"transcript": "NM_005732.4",
"protein_id": "NP_005723.2",
"transcript_support_level": null,
"aa_start": 1204,
"aa_end": null,
"aa_length": 1312,
"cds_start": 3612,
"cds_end": null,
"cds_length": 3939,
"cdna_start": 3960,
"cdna_end": null,
"cdna_length": 8272,
"mane_select": "ENST00000378823.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "GQK",
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant",
"splice_donor_variant",
"splice_region_variant",
"intron_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAD50",
"gene_hgnc_id": 9816,
"hgvs_c": "c.3612_3618+5delACAAAAGGCAGG",
"hgvs_p": "p.Gln1205fs",
"transcript": "ENST00000378823.8",
"protein_id": "ENSP00000368100.4",
"transcript_support_level": 1,
"aa_start": 1204,
"aa_end": null,
"aa_length": 1312,
"cds_start": 3612,
"cds_end": null,
"cds_length": 3939,
"cdna_start": 3960,
"cdna_end": null,
"cdna_length": 8272,
"mane_select": "NM_005732.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "GQK",
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant",
"splice_donor_variant",
"splice_region_variant",
"intron_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000283782",
"gene_hgnc_id": null,
"hgvs_c": "c.3315_3321+5delACAAAAGGCAGG",
"hgvs_p": "p.Gln1106fs",
"transcript": "ENST00000638452.2",
"protein_id": "ENSP00000492349.2",
"transcript_support_level": 5,
"aa_start": 1105,
"aa_end": null,
"aa_length": 1213,
"cds_start": 3315,
"cds_end": null,
"cds_length": 3642,
"cdna_start": 3851,
"cdna_end": null,
"cdna_length": 7893,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_donor_variant",
"splice_region_variant",
"3_prime_UTR_variant",
"intron_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAD50",
"gene_hgnc_id": 9816,
"hgvs_c": "n.*3238_*3244+5delACAAAAGGCAGG",
"hgvs_p": null,
"transcript": "ENST00000533482.5",
"protein_id": "ENSP00000431225.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4373,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.514_525delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000417516.2",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1228,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.322_333delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000435042.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 472,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.68_79delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000457489.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 439,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.278_289delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000814671.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1503,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.236_247delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000814672.1",
"protein_id": null,
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"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.179_190delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000814673.1",
"protein_id": null,
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"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 553,
"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.503_514delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000814676.1",
"protein_id": null,
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"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
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"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.293_304delTGCCTTTTGTCC",
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.192_203delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000814679.1",
"protein_id": null,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.139_150delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000814680.1",
"protein_id": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.266_277delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000814681.1",
"protein_id": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.216_227delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "ENST00000814682.1",
"protein_id": null,
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},
{
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"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.85_96delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "NR_132124.1",
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.229_240delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "NR_132125.1",
"protein_id": null,
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"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TH2LCRR",
"gene_hgnc_id": 40495,
"hgvs_c": "n.214_225delTGCCTTTTGTCC",
"hgvs_p": null,
"transcript": "NR_132126.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": 392,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "GQK",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant",
"splice_donor_variant",
"splice_region_variant",
"intron_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000283782",
"gene_hgnc_id": null,
"hgvs_c": "c.3315_3321+5delACAAAAGGCAGG",
"hgvs_p": "p.Gln1106fs",
"transcript": "ENST00000638568.2",
"protein_id": "ENSP00000491158.2",
"transcript_support_level": 5,
"aa_start": 1105,
"aa_end": null,
"aa_length": 1213,
"cds_start": 3315,
"cds_end": null,
"cds_length": 3642,
"cdna_start": 3914,
"cdna_end": null,
"cdna_length": 7956,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
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{
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"PP5_Very_Strong"
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"verdict": "Pathogenic",
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"intron_variant"
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{
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"PP5_Very_Strong"
],
"verdict": "Pathogenic",
"transcript": "ENST00000638452.2",
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"effects": [
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"splice_donor_variant",
"splice_region_variant",
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.3315_3321+5delACAAAAGGCAGG",
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},
{
"score": 9,
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"PP5_Very_Strong"
],
"verdict": "Likely_pathogenic",
"transcript": "ENST00000458509.1",
"gene_symbol": "TH2LCRR",
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],
"inheritance_mode": "",
"hgvs_c": "n.229_240delTGCCTTTTGTCC",
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}
],
"clinvar_disease": "Hereditary cancer-predisposing syndrome,Nijmegen breakage syndrome-like disorder",
"clinvar_classification": "Likely pathogenic",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LP:4",
"phenotype_combined": "Hereditary cancer-predisposing syndrome|Nijmegen breakage syndrome-like disorder",
"pathogenicity_classification_combined": "Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}