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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-19551756-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=19551756&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 19551756,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000382275.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1254-7751C>G",
"hgvs_p": null,
"transcript": "NM_004934.5",
"protein_id": "NP_004925.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4793,
"mane_select": "ENST00000382275.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1254-7751C>G",
"hgvs_p": null,
"transcript": "ENST00000382275.6",
"protein_id": "ENSP00000371710.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4793,
"mane_select": "NM_004934.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1254-7751C>G",
"hgvs_p": null,
"transcript": "ENST00000274170.8",
"protein_id": "ENSP00000274170.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2809,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1254-7751C>G",
"hgvs_p": null,
"transcript": "ENST00000506372.5",
"protein_id": "ENSP00000424931.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 575,
"cds_start": -4,
"cds_end": null,
"cds_length": 1728,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2432,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1254-7751C>G",
"hgvs_p": null,
"transcript": "NM_001291956.3",
"protein_id": "NP_001278885.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5134,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1254-7751C>G",
"hgvs_p": null,
"transcript": "NM_001349556.2",
"protein_id": "NP_001336485.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4988,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1254-7751C>G",
"hgvs_p": null,
"transcript": "NM_001349558.2",
"protein_id": "NP_001336487.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5282,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1254-7751C>G",
"hgvs_p": null,
"transcript": "NM_001349559.2",
"protein_id": "NP_001336488.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4789,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1254-7751C>G",
"hgvs_p": null,
"transcript": "ENST00000507958.5",
"protein_id": "ENSP00000425093.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3542,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1254-7751C>G",
"hgvs_p": null,
"transcript": "ENST00000511273.1",
"protein_id": "ENSP00000425854.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 590,
"cds_start": -4,
"cds_end": null,
"cds_length": 1773,
"cdna_start": null,
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"cdna_length": 2318,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1254-7751C>G",
"hgvs_p": null,
"transcript": "NM_001291957.2",
"protein_id": "NP_001278886.1",
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"aa_start": null,
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"cdna_start": null,
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},
{
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"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "CDH18",
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"hgvs_c": "c.1254-7751C>G",
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"transcript": "NM_001349560.2",
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},
{
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"strand": false,
"consequences": [
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],
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"intron_rank": 8,
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"gene_symbol": "CDH18",
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"hgvs_c": "c.1254-7751C>G",
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"transcript": "NM_001167667.3",
"protein_id": "NP_001161139.1",
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},
{
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],
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"gene_symbol": "CDH18",
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"hgvs_c": "c.1254-7751C>G",
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},
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],
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"hgvs_c": "c.1254-7751C>G",
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"transcript": "ENST00000502796.5",
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},
{
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],
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"gene_symbol": "CDH18",
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"transcript": "NM_001349562.2",
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],
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},
{
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],
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"gene_symbol": "CDH18",
"gene_hgnc_id": 1757,
"hgvs_c": "c.1092-7751C>G",
"hgvs_p": null,
"transcript": "ENST00000515257.6",
"protein_id": "ENSP00000427383.1",
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},
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],
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"gene_symbol": "CDH18",
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"hgvs_c": "c.1254-7751C>G",
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],
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},
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],
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"gene_symbol": "CDH18",
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},
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"strand": false,
"consequences": [
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],
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"intron_rank": 9,
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"gene_symbol": "CDH18",
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"hgvs_c": "c.1254-7751C>G",
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"transcript": "XM_017008926.3",
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},
{
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"protein_coding": true,
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"consequences": [
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],
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"intron_rank": 9,
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"gene_symbol": "CDH18",
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"hgvs_c": "c.1254-7751C>G",
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"transcript": "XM_017008927.3",
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}
],
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}