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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 5-251056-T-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=251056&ref=T&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "5",
      "pos": 251056,
      "ref": "T",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_004168.4",
      "consequences": [
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1616T>G",
          "hgvs_p": "p.Ile539Ser",
          "transcript": "NM_004168.4",
          "protein_id": "NP_004159.2",
          "transcript_support_level": null,
          "aa_start": 539,
          "aa_end": null,
          "aa_length": 664,
          "cds_start": 1616,
          "cds_end": null,
          "cds_length": 1995,
          "cdna_start": 1652,
          "cdna_end": null,
          "cdna_length": 2693,
          "mane_select": "ENST00000264932.11",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_004168.4"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1616T>G",
          "hgvs_p": "p.Ile539Ser",
          "transcript": "ENST00000264932.11",
          "protein_id": "ENSP00000264932.6",
          "transcript_support_level": 1,
          "aa_start": 539,
          "aa_end": null,
          "aa_length": 664,
          "cds_start": 1616,
          "cds_end": null,
          "cds_length": 1995,
          "cdna_start": 1652,
          "cdna_end": null,
          "cdna_length": 2693,
          "mane_select": "NM_004168.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000264932.11"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000286001",
          "gene_hgnc_id": null,
          "hgvs_c": "n.*349T>G",
          "hgvs_p": null,
          "transcript": "ENST00000651543.1",
          "protein_id": "ENSP00000499215.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3665,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000651543.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000286001",
          "gene_hgnc_id": null,
          "hgvs_c": "n.*349T>G",
          "hgvs_p": null,
          "transcript": "ENST00000651543.1",
          "protein_id": "ENSP00000499215.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3665,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000651543.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1802T>G",
          "hgvs_p": "p.Ile601Ser",
          "transcript": "ENST00000874235.1",
          "protein_id": "ENSP00000544294.1",
          "transcript_support_level": null,
          "aa_start": 601,
          "aa_end": null,
          "aa_length": 726,
          "cds_start": 1802,
          "cds_end": null,
          "cds_length": 2181,
          "cdna_start": 1855,
          "cdna_end": null,
          "cdna_length": 2511,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874235.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1769T>G",
          "hgvs_p": "p.Ile590Ser",
          "transcript": "ENST00000952715.1",
          "protein_id": "ENSP00000622774.1",
          "transcript_support_level": null,
          "aa_start": 590,
          "aa_end": null,
          "aa_length": 715,
          "cds_start": 1769,
          "cds_end": null,
          "cds_length": 2148,
          "cdna_start": 1798,
          "cdna_end": null,
          "cdna_length": 2417,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000952715.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1670T>G",
          "hgvs_p": "p.Ile557Ser",
          "transcript": "ENST00000874242.1",
          "protein_id": "ENSP00000544301.1",
          "transcript_support_level": null,
          "aa_start": 557,
          "aa_end": null,
          "aa_length": 682,
          "cds_start": 1670,
          "cds_end": null,
          "cds_length": 2049,
          "cdna_start": 1714,
          "cdna_end": null,
          "cdna_length": 2355,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874242.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1616T>G",
          "hgvs_p": "p.Ile539Ser",
          "transcript": "ENST00000952713.1",
          "protein_id": "ENSP00000622772.1",
          "transcript_support_level": null,
          "aa_start": 539,
          "aa_end": null,
          "aa_length": 681,
          "cds_start": 1616,
          "cds_end": null,
          "cds_length": 2046,
          "cdna_start": 1652,
          "cdna_end": null,
          "cdna_length": 2322,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000952713.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1643T>G",
          "hgvs_p": "p.Ile548Ser",
          "transcript": "ENST00000952712.1",
          "protein_id": "ENSP00000622771.1",
          "transcript_support_level": null,
          "aa_start": 548,
          "aa_end": null,
          "aa_length": 673,
          "cds_start": 1643,
          "cds_end": null,
          "cds_length": 2022,
          "cdna_start": 1690,
          "cdna_end": null,
          "cdna_length": 2306,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000952712.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1640T>G",
          "hgvs_p": "p.Ile547Ser",
          "transcript": "ENST00000874248.1",
          "protein_id": "ENSP00000544307.1",
          "transcript_support_level": null,
          "aa_start": 547,
          "aa_end": null,
          "aa_length": 672,
          "cds_start": 1640,
          "cds_end": null,
          "cds_length": 2019,
          "cdna_start": 1643,
          "cdna_end": null,
          "cdna_length": 2285,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874248.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1622T>G",
          "hgvs_p": "p.Ile541Ser",
          "transcript": "ENST00000952708.1",
          "protein_id": "ENSP00000622767.1",
          "transcript_support_level": null,
          "aa_start": 541,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1622,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": 1697,
          "cdna_end": null,
          "cdna_length": 2333,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000952708.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1613T>G",
          "hgvs_p": "p.Ile538Ser",
          "transcript": "ENST00000874234.1",
          "protein_id": "ENSP00000544293.1",
          "transcript_support_level": null,
          "aa_start": 538,
          "aa_end": null,
          "aa_length": 663,
          "cds_start": 1613,
          "cds_end": null,
          "cds_length": 1992,
          "cdna_start": 1666,
          "cdna_end": null,
          "cdna_length": 2324,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874234.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1613T>G",
          "hgvs_p": "p.Ile538Ser",
          "transcript": "ENST00000952707.1",
          "protein_id": "ENSP00000622766.1",
          "transcript_support_level": null,
          "aa_start": 538,
          "aa_end": null,
          "aa_length": 663,
          "cds_start": 1613,
          "cds_end": null,
          "cds_length": 1992,
          "cdna_start": 1695,
          "cdna_end": null,
          "cdna_length": 2737,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000952707.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1592T>G",
          "hgvs_p": "p.Ile531Ser",
          "transcript": "ENST00000874246.1",
          "protein_id": "ENSP00000544305.1",
          "transcript_support_level": null,
          "aa_start": 531,
          "aa_end": null,
          "aa_length": 656,
          "cds_start": 1592,
          "cds_end": null,
          "cds_length": 1971,
          "cdna_start": 1627,
          "cdna_end": null,
          "cdna_length": 2260,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874246.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1583T>G",
          "hgvs_p": "p.Ile528Ser",
          "transcript": "ENST00000874244.1",
          "protein_id": "ENSP00000544303.1",
          "transcript_support_level": null,
          "aa_start": 528,
          "aa_end": null,
          "aa_length": 653,
          "cds_start": 1583,
          "cds_end": null,
          "cds_length": 1962,
          "cdna_start": 1618,
          "cdna_end": null,
          "cdna_length": 2259,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874244.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1583T>G",
          "hgvs_p": "p.Ile528Ser",
          "transcript": "ENST00000952709.1",
          "protein_id": "ENSP00000622768.1",
          "transcript_support_level": null,
          "aa_start": 528,
          "aa_end": null,
          "aa_length": 653,
          "cds_start": 1583,
          "cds_end": null,
          "cds_length": 1962,
          "cdna_start": 1628,
          "cdna_end": null,
          "cdna_length": 2269,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000952709.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1571T>G",
          "hgvs_p": "p.Ile524Ser",
          "transcript": "ENST00000952716.1",
          "protein_id": "ENSP00000622775.1",
          "transcript_support_level": null,
          "aa_start": 524,
          "aa_end": null,
          "aa_length": 649,
          "cds_start": 1571,
          "cds_end": null,
          "cds_length": 1950,
          "cdna_start": 1596,
          "cdna_end": null,
          "cdna_length": 2215,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000952716.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1565T>G",
          "hgvs_p": "p.Ile522Ser",
          "transcript": "ENST00000952711.1",
          "protein_id": "ENSP00000622770.1",
          "transcript_support_level": null,
          "aa_start": 522,
          "aa_end": null,
          "aa_length": 647,
          "cds_start": 1565,
          "cds_end": null,
          "cds_length": 1944,
          "cdna_start": 1594,
          "cdna_end": null,
          "cdna_length": 2238,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000952711.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1616T>G",
          "hgvs_p": "p.Ile539Ser",
          "transcript": "ENST00000874236.1",
          "protein_id": "ENSP00000544295.1",
          "transcript_support_level": null,
          "aa_start": 539,
          "aa_end": null,
          "aa_length": 626,
          "cds_start": 1616,
          "cds_end": null,
          "cds_length": 1881,
          "cdna_start": 1667,
          "cdna_end": null,
          "cdna_length": 2194,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874236.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHA",
          "gene_hgnc_id": 10680,
          "hgvs_c": "c.1472T>G",
          "hgvs_p": "p.Ile491Ser",
          "transcript": "NM_001294332.2",
          "protein_id": "NP_001281261.1",
          "transcript_support_level": null,
          "aa_start": 491,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1472,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": 1508,
          "cdna_end": null,
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      "dbsnp": "rs749219128",
      "frequency_reference_population": 0.000012331233,
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      "gnomad_mito_homoplasmic": null,
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      "computational_score_selected": 0.9260374903678894,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.761,
      "revel_prediction": "Pathogenic",
      "alphamissense_score": 0.8309,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.14,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 7.316,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
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      "apogee2_prediction": null,
      "mitotip_score": null,
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      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PP3_Moderate",
      "acmg_by_gene": [
        {
          "score": 2,
          "benign_score": 0,
          "pathogenic_score": 2,
          "criteria": [
            "PP3_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_004168.4",
          "gene_symbol": "SDHA",
          "hgnc_id": 10680,
          "effects": [
            "missense_variant"
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          "inheritance_mode": "AD,AR",
          "hgvs_c": "c.1616T>G",
          "hgvs_p": "p.Ile539Ser"
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        {
          "score": 4,
          "benign_score": 0,
          "pathogenic_score": 4,
          "criteria": [
            "PM2",
            "PP3_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000651543.1",
          "gene_symbol": "ENSG00000286001",
          "hgnc_id": null,
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.*349T>G",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": " nuclear type 1,Dilated cardiomyopathy 1GG,Hereditary cancer-predisposing syndrome,Mitochondrial complex II deficiency,Pheochromocytoma/paraganglioma syndrome 5,not provided",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "US:4",
      "phenotype_combined": "Mitochondrial complex II deficiency, nuclear type 1;Pheochromocytoma/paraganglioma syndrome 5|Hereditary cancer-predisposing syndrome|Dilated cardiomyopathy 1GG|not provided",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.