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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-37051759-ATTTTT-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=37051759&ref=ATTTTT&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 37051759,
"ref": "ATTTTT",
"alt": "A",
"effect": "intron_variant",
"transcript": "NM_133433.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": 40,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "c.6955-13_6955-9delTTTTT",
"hgvs_p": null,
"transcript": "NM_133433.4",
"protein_id": "NP_597677.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2804,
"cds_start": -4,
"cds_end": null,
"cds_length": 8415,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10425,
"mane_select": "ENST00000282516.13",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": 40,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "c.6955-13_6955-9delTTTTT",
"hgvs_p": null,
"transcript": "ENST00000282516.13",
"protein_id": "ENSP00000282516.8",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2804,
"cds_start": -4,
"cds_end": null,
"cds_length": 8415,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10425,
"mane_select": "NM_133433.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": 40,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "c.6955-13_6955-9delTTTTT",
"hgvs_p": null,
"transcript": "ENST00000448238.2",
"protein_id": "ENSP00000406266.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2697,
"cds_start": -4,
"cds_end": null,
"cds_length": 8094,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8729,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "n.824_828delTTTTT",
"hgvs_p": null,
"transcript": "ENST00000514335.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2948,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": 40,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "c.6955-13_6955-9delTTTTT",
"hgvs_p": null,
"transcript": "NM_001438586.1",
"protein_id": "NP_001425515.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2698,
"cds_start": -4,
"cds_end": null,
"cds_length": 8097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10466,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": 40,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "c.6955-13_6955-9delTTTTT",
"hgvs_p": null,
"transcript": "NM_015384.5",
"protein_id": "NP_056199.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2697,
"cds_start": -4,
"cds_end": null,
"cds_length": 8094,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10379,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": 40,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "c.6955-13_6955-9delTTTTT",
"hgvs_p": null,
"transcript": "ENST00000652901.1",
"protein_id": "ENSP00000499536.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2649,
"cds_start": -4,
"cds_end": null,
"cds_length": 7950,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9228,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": 40,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "c.6955-13_6955-9delTTTTT",
"hgvs_p": null,
"transcript": "XM_006714467.3",
"protein_id": "XP_006714530.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2755,
"cds_start": -4,
"cds_end": null,
"cds_length": 8268,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10278,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": 39,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "c.6757-13_6757-9delTTTTT",
"hgvs_p": null,
"transcript": "XM_006714468.3",
"protein_id": "XP_006714531.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2738,
"cds_start": -4,
"cds_end": null,
"cds_length": 8217,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10227,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": 40,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "c.6955-13_6955-9delTTTTT",
"hgvs_p": null,
"transcript": "XM_017009329.2",
"protein_id": "XP_016864818.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2649,
"cds_start": -4,
"cds_end": null,
"cds_length": 7950,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10319,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 41,
"intron_rank": 34,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "c.6295-13_6295-9delTTTTT",
"hgvs_p": null,
"transcript": "XM_005248282.6",
"protein_id": "XP_005248339.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2584,
"cds_start": -4,
"cds_end": null,
"cds_length": 7755,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9980,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 43,
"intron_rank": 40,
"intron_rank_end": null,
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"hgvs_c": "c.6955-13_6955-9delTTTTT",
"hgvs_p": null,
"transcript": "XM_011514015.2",
"protein_id": "XP_011512317.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2421,
"cds_start": -4,
"cds_end": null,
"cds_length": 7266,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7895,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "NIPBL",
"gene_hgnc_id": 28862,
"dbsnp": "rs757731487",
"frequency_reference_population": 9.0629624e-7,
"hom_count_reference_population": 0,
"allele_count_reference_population": 1,
"gnomad_exomes_af": 9.06296e-7,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": null,
"computational_prediction_selected": null,
"computational_source_selected": null,
"splice_score_selected": null,
"splice_prediction_selected": null,
"splice_source_selected": null,
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": null,
"bayesdelnoaf_prediction": null,
"phylop100way_score": 1.978,
"phylop100way_prediction": "Benign",
"spliceai_max_score": null,
"spliceai_max_prediction": null,
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_133433.4",
"gene_symbol": "NIPBL",
"hgnc_id": 28862,
"effects": [
"intron_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.6955-13_6955-9delTTTTT",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}