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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 6-137198160-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=137198160&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "6",
      "pos": 137198160,
      "ref": "G",
      "alt": "C",
      "effect": "synonymous_variant",
      "transcript": "ENST00000367739.9",
      "consequences": [
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1341C>G",
          "hgvs_p": "p.Thr447Thr",
          "transcript": "NM_000416.3",
          "protein_id": "NP_000407.1",
          "transcript_support_level": null,
          "aa_start": 447,
          "aa_end": null,
          "aa_length": 489,
          "cds_start": 1341,
          "cds_end": null,
          "cds_length": 1470,
          "cdna_start": 1399,
          "cdna_end": null,
          "cdna_length": 2074,
          "mane_select": "ENST00000367739.9",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1341C>G",
          "hgvs_p": "p.Thr447Thr",
          "transcript": "ENST00000367739.9",
          "protein_id": "ENSP00000356713.5",
          "transcript_support_level": 1,
          "aa_start": 447,
          "aa_end": null,
          "aa_length": 489,
          "cds_start": 1341,
          "cds_end": null,
          "cds_length": 1470,
          "cdna_start": 1399,
          "cdna_end": null,
          "cdna_length": 2074,
          "mane_select": "NM_000416.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1311C>G",
          "hgvs_p": "p.Thr437Thr",
          "transcript": "NM_001363526.1",
          "protein_id": "NP_001350455.1",
          "transcript_support_level": null,
          "aa_start": 437,
          "aa_end": null,
          "aa_length": 479,
          "cds_start": 1311,
          "cds_end": null,
          "cds_length": 1440,
          "cdna_start": 1580,
          "cdna_end": null,
          "cdna_length": 2256,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1311C>G",
          "hgvs_p": "p.Thr437Thr",
          "transcript": "ENST00000414770.6",
          "protein_id": "ENSP00000394230.2",
          "transcript_support_level": 3,
          "aa_start": 437,
          "aa_end": null,
          "aa_length": 479,
          "cds_start": 1311,
          "cds_end": null,
          "cds_length": 1440,
          "cdna_start": 1574,
          "cdna_end": null,
          "cdna_length": 2237,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1311C>G",
          "hgvs_p": "p.Thr437Thr",
          "transcript": "ENST00000646036.1",
          "protein_id": "ENSP00000496387.1",
          "transcript_support_level": null,
          "aa_start": 437,
          "aa_end": null,
          "aa_length": 479,
          "cds_start": 1311,
          "cds_end": null,
          "cds_length": 1440,
          "cdna_start": 1520,
          "cdna_end": null,
          "cdna_length": 2183,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1311C>G",
          "hgvs_p": "p.Thr437Thr",
          "transcript": "ENST00000646898.1",
          "protein_id": "ENSP00000494069.1",
          "transcript_support_level": null,
          "aa_start": 437,
          "aa_end": null,
          "aa_length": 479,
          "cds_start": 1311,
          "cds_end": null,
          "cds_length": 1440,
          "cdna_start": 1856,
          "cdna_end": null,
          "cdna_length": 2519,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1284C>G",
          "hgvs_p": "p.Thr428Thr",
          "transcript": "ENST00000642390.1",
          "protein_id": "ENSP00000496468.1",
          "transcript_support_level": null,
          "aa_start": 428,
          "aa_end": null,
          "aa_length": 470,
          "cds_start": 1284,
          "cds_end": null,
          "cds_length": 1413,
          "cdna_start": 1460,
          "cdna_end": null,
          "cdna_length": 2123,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1284C>G",
          "hgvs_p": "p.Thr428Thr",
          "transcript": "ENST00000645045.1",
          "protein_id": "ENSP00000494493.2",
          "transcript_support_level": null,
          "aa_start": 428,
          "aa_end": null,
          "aa_length": 470,
          "cds_start": 1284,
          "cds_end": null,
          "cds_length": 1413,
          "cdna_start": 1450,
          "cdna_end": null,
          "cdna_length": 2125,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1239C>G",
          "hgvs_p": "p.Thr413Thr",
          "transcript": "ENST00000458076.6",
          "protein_id": "ENSP00000389249.2",
          "transcript_support_level": 3,
          "aa_start": 413,
          "aa_end": null,
          "aa_length": 455,
          "cds_start": 1239,
          "cds_end": null,
          "cds_length": 1368,
          "cdna_start": 1361,
          "cdna_end": null,
          "cdna_length": 2038,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1218C>G",
          "hgvs_p": "p.Thr406Thr",
          "transcript": "NM_001363527.1",
          "protein_id": "NP_001350456.1",
          "transcript_support_level": null,
          "aa_start": 406,
          "aa_end": null,
          "aa_length": 448,
          "cds_start": 1218,
          "cds_end": null,
          "cds_length": 1347,
          "cdna_start": 1781,
          "cdna_end": null,
          "cdna_length": 2457,
          "mane_select": null,
          "mane_plus": null,
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        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 7,
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          "exon_count": 7,
          "intron_rank": null,
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          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1218C>G",
          "hgvs_p": "p.Thr406Thr",
          "transcript": "ENST00000644894.1",
          "protein_id": "ENSP00000495272.1",
          "transcript_support_level": null,
          "aa_start": 406,
          "aa_end": null,
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          "cds_start": 1218,
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          "cds_length": 1347,
          "cdna_start": 1829,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
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          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1218C>G",
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          "cds_start": 1218,
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          "mane_select": null,
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        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 7,
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          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1218C>G",
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          "transcript": "ENST00000647124.1",
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        {
          "aa_ref": "T",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
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          "exon_count": 7,
          "intron_rank": null,
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          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1218C>G",
          "hgvs_p": "p.Thr406Thr",
          "transcript": "ENST00000696693.1",
          "protein_id": "ENSP00000512814.1",
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          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
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          ],
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          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
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          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 6,
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          "exon_count": 6,
          "intron_rank": null,
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          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1179C>G",
          "hgvs_p": "p.Thr393Thr",
          "transcript": "ENST00000696695.1",
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          "cds_start": 1179,
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          "biotype": null,
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        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          "exon_rank": 8,
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          "exon_count": 8,
          "intron_rank": null,
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          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1311C>G",
          "hgvs_p": "p.Thr437Thr",
          "transcript": "XM_006715470.4",
          "protein_id": "XP_006715533.1",
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          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
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          "strand": false,
          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "IFNGR1",
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          "hgvs_c": "c.1311C>G",
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        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "IFNGR1",
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "c.1311C>G",
          "hgvs_p": "p.Thr437Thr",
          "transcript": "XM_047418726.1",
          "protein_id": "XP_047274682.1",
          "transcript_support_level": null,
          "aa_start": 437,
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          "aa_length": 479,
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          "cds_length": 1440,
          "cdna_start": 1640,
          "cdna_end": null,
          "cdna_length": 2316,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
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          "gene_symbol": "IFNGR1",
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          "cds_start": -4,
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        },
        {
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          "protein_coding": false,
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          "consequences": [
            "non_coding_transcript_exon_variant"
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          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
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          "hgvs_c": "n.*1240C>G",
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          "protein_id": "ENSP00000512817.1",
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          "cdna_start": null,
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
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          "gene_symbol": "IFNGR1",
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          "hgvs_c": "c.*439C>G",
          "hgvs_p": null,
          "transcript": "ENST00000696694.1",
          "protein_id": "ENSP00000512815.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 257,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 774,
          "cdna_start": null,
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          "cdna_length": 1946,
          "mane_select": null,
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        },
        {
          "aa_ref": null,
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          "protein_coding": false,
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          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
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          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "n.*1368C>G",
          "hgvs_p": null,
          "transcript": "ENST00000643119.1",
          "protein_id": "ENSP00000495934.1",
          "transcript_support_level": null,
          "aa_start": null,
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        },
        {
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          "protein_coding": false,
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          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
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          "gene_symbol": "IFNGR1",
          "gene_hgnc_id": 5439,
          "hgvs_c": "n.*1240C>G",
          "hgvs_p": null,
          "transcript": "ENST00000696696.1",
          "protein_id": "ENSP00000512817.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 2124,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        }
      ],
      "gene_symbol": "IFNGR1",
      "gene_hgnc_id": 5439,
      "dbsnp": "rs41288979",
      "frequency_reference_population": 0.000008208743,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 12,
      "gnomad_exomes_af": 0.00000820874,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 12,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.8799999952316284,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.88,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -3.164,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -7,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Moderate,BP7",
      "acmg_by_gene": [
        {
          "score": -7,
          "benign_score": 7,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Moderate",
            "BP7"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000367739.9",
          "gene_symbol": "IFNGR1",
          "hgnc_id": 5439,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AD,AR",
          "hgvs_c": "c.1341C>G",
          "hgvs_p": "p.Thr447Thr"
        }
      ],
      "clinvar_disease": "Disseminated atypical mycobacterial infection",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LB:1",
      "phenotype_combined": "Disseminated atypical mycobacterial infection",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}