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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-31642752-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=31642752&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 31642752,
"ref": "A",
"alt": "C",
"effect": "intron_variant",
"transcript": "NM_001387994.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2043+77T>G",
"hgvs_p": null,
"transcript": "NM_001387994.1",
"protein_id": "NP_001374923.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1162,
"cds_start": -4,
"cds_end": null,
"cds_length": 3489,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3843,
"mane_select": "ENST00000676615.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2043+77T>G",
"hgvs_p": null,
"transcript": "ENST00000676615.2",
"protein_id": "ENSP00000502941.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1162,
"cds_start": -4,
"cds_end": null,
"cds_length": 3489,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3843,
"mane_select": "NM_001387994.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.1935+77T>G",
"hgvs_p": null,
"transcript": "ENST00000211379.9",
"protein_id": "ENSP00000211379.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1126,
"cds_start": -4,
"cds_end": null,
"cds_length": 3381,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3779,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.1935+77T>G",
"hgvs_p": null,
"transcript": "ENST00000375976.8",
"protein_id": "ENSP00000365143.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1126,
"cds_start": -4,
"cds_end": null,
"cds_length": 3381,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3644,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.1857+77T>G",
"hgvs_p": null,
"transcript": "ENST00000375964.11",
"protein_id": "ENSP00000365131.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1100,
"cds_start": -4,
"cds_end": null,
"cds_length": 3303,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3701,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "n.571T>G",
"hgvs_p": null,
"transcript": "ENST00000465348.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 639,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2076+77T>G",
"hgvs_p": null,
"transcript": "ENST00000676571.1",
"protein_id": "ENSP00000504005.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1173,
"cds_start": -4,
"cds_end": null,
"cds_length": 3522,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3920,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2070+77T>G",
"hgvs_p": null,
"transcript": "NM_001388012.1",
"protein_id": "NP_001374941.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1171,
"cds_start": -4,
"cds_end": null,
"cds_length": 3516,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3776,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2043+77T>G",
"hgvs_p": null,
"transcript": "NM_001387989.1",
"protein_id": "NP_001374918.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1162,
"cds_start": -4,
"cds_end": null,
"cds_length": 3489,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3754,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2043+77T>G",
"hgvs_p": null,
"transcript": "NM_001387996.1",
"protein_id": "NP_001374925.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1162,
"cds_start": -4,
"cds_end": null,
"cds_length": 3489,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3867,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2043+77T>G",
"hgvs_p": null,
"transcript": "NM_001388011.1",
"protein_id": "NP_001374940.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 3749,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2043+77T>G",
"hgvs_p": null,
"transcript": "NM_001388020.1",
"protein_id": "NP_001374949.1",
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"cds_start": -4,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2040+77T>G",
"hgvs_p": null,
"transcript": "NM_001387988.1",
"protein_id": "NP_001374917.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1161,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 26,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2040+77T>G",
"hgvs_p": null,
"transcript": "NM_001387993.1",
"protein_id": "NP_001374922.1",
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},
{
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"intron_variant"
],
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"gene_symbol": "BAG6",
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"hgvs_c": "c.2040+77T>G",
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"transcript": "NM_001387995.1",
"protein_id": "NP_001374924.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 26,
"intron_rank": 15,
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"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2040+77T>G",
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"transcript": "NM_001388010.1",
"protein_id": "NP_001374939.1",
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},
{
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],
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"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.2040+77T>G",
"hgvs_p": null,
"transcript": "NM_001388019.1",
"protein_id": "NP_001374948.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
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"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.1989+77T>G",
"hgvs_p": null,
"transcript": "NM_001387991.1",
"protein_id": "NP_001374920.1",
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},
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 25,
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"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.1989+77T>G",
"hgvs_p": null,
"transcript": "NM_001387992.1",
"protein_id": "NP_001374921.1",
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},
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],
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"gene_symbol": "BAG6",
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"transcript": "NM_001388009.1",
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},
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"strand": false,
"consequences": [
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],
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"gene_symbol": "BAG6",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.1935+77T>G",
"hgvs_p": null,
"transcript": "NM_001098534.2",
"protein_id": "NP_001092004.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "BAG6",
"gene_hgnc_id": 13919,
"hgvs_c": "c.1935+77T>G",
"hgvs_p": null,
"transcript": "NM_001387961.1",
"protein_id": "NP_001374890.1",
"transcript_support_level": null,
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