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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-35372523-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=35372523&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 35372523,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000360694.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-102+25373C>T",
"hgvs_p": null,
"transcript": "NM_006238.5",
"protein_id": "NP_006229.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 441,
"cds_start": -4,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3734,
"mane_select": "ENST00000360694.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-102+25373C>T",
"hgvs_p": null,
"transcript": "ENST00000360694.8",
"protein_id": "ENSP00000353916.3",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 441,
"cds_start": -4,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3734,
"mane_select": "NM_006238.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-197-24975C>T",
"hgvs_p": null,
"transcript": "NM_001171818.2",
"protein_id": "NP_001165289.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 441,
"cds_start": -4,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3830,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-197-24975C>T",
"hgvs_p": null,
"transcript": "ENST00000311565.4",
"protein_id": "ENSP00000310928.4",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 441,
"cds_start": -4,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3774,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.13+25373C>T",
"hgvs_p": null,
"transcript": "NM_001171819.2",
"protein_id": "NP_001165290.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 402,
"cds_start": -4,
"cds_end": null,
"cds_length": 1209,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3503,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.13+25373C>T",
"hgvs_p": null,
"transcript": "ENST00000448077.6",
"protein_id": "ENSP00000414372.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 402,
"cds_start": -4,
"cds_end": null,
"cds_length": 1209,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3516,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-102+25373C>T",
"hgvs_p": null,
"transcript": "NM_177435.3",
"protein_id": "NP_803184.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 361,
"cds_start": -4,
"cds_end": null,
"cds_length": 1086,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2008,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-197-24975C>T",
"hgvs_p": null,
"transcript": "ENST00000337400.6",
"protein_id": "ENSP00000337063.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 361,
"cds_start": -4,
"cds_end": null,
"cds_length": 1086,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2041,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-102+25373C>T",
"hgvs_p": null,
"transcript": "NM_001171820.2",
"protein_id": "NP_001165291.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 343,
"cds_start": -4,
"cds_end": null,
"cds_length": 1032,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3440,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-102+25373C>T",
"hgvs_p": null,
"transcript": "ENST00000418635.6",
"protein_id": "ENSP00000413314.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 343,
"cds_start": -4,
"cds_end": null,
"cds_length": 1032,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3453,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000297330",
"gene_hgnc_id": null,
"hgvs_c": "n.85+9460G>A",
"hgvs_p": null,
"transcript": "ENST00000747152.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 8,
"intron_rank": 2,
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"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-102+25373C>T",
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"transcript": "XM_005249193.2",
"protein_id": "XP_005249250.1",
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"aa_start": null,
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 1,
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"gene_symbol": "PPARD",
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"hgvs_c": "c.-102+29842C>T",
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"transcript": "XM_006715123.2",
"protein_id": "XP_006715186.1",
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"cds_start": -4,
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},
{
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"strand": true,
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],
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"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-102+19473C>T",
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"transcript": "XM_011514707.2",
"protein_id": "XP_011513009.1",
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},
{
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],
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"gene_symbol": "PPARD",
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"transcript": "XM_011514710.2",
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},
{
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"protein_coding": true,
"strand": true,
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],
"exon_rank": null,
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"intron_rank": 2,
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"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-326-24454C>T",
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"transcript": "XM_017010973.2",
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},
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],
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"gene_symbol": "PPARD",
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"hgvs_c": "c.-102+19473C>T",
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"transcript": "XM_017010974.2",
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},
{
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],
"exon_rank": null,
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"exon_count": 10,
"intron_rank": 4,
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"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-102+23520C>T",
"hgvs_p": null,
"transcript": "XM_047418915.1",
"protein_id": "XP_047274871.1",
"transcript_support_level": null,
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},
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"consequences": [
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],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 3,
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"gene_symbol": "PPARD",
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"hgvs_c": "c.-102+19473C>T",
"hgvs_p": null,
"transcript": "XM_047418916.1",
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},
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],
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"transcript": "XM_047418917.1",
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},
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],
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},
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"strand": true,
"consequences": [
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],
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"intron_rank": 5,
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"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-327+19473C>T",
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"transcript": "XM_047418919.1",
"protein_id": "XP_047274875.1",
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"aa_start": null,
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"feature": null
},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PPARD",
"gene_hgnc_id": 9235,
"hgvs_c": "c.-327+23520C>T",
"hgvs_p": null,
"transcript": "XM_047418920.1",
"protein_id": "XP_047274876.1",
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},
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}