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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 7-105532842-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=105532842&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 3,
          "criteria": [
            "BP4_Moderate",
            "BP6"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "RINT1",
          "hgnc_id": 21876,
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "inheritance_mode": "AR,AD,Unknown",
          "pathogenic_score": 0,
          "score": -3,
          "transcript": "NM_021930.6",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4_Moderate,BP6",
      "acmg_score": -3,
      "allele_count_reference_population": 15,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.082,
      "alt": "A",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.68,
      "chr": "7",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_disease": "not provided,not specified",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:2 LB:1",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.08727282285690308,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 792,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2860,
          "cdna_start": 176,
          "cds_end": null,
          "cds_length": 2379,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "NM_021930.6",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000257700.7",
          "protein_coding": true,
          "protein_id": "NP_068749.3",
          "strand": true,
          "transcript": "NM_021930.6",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 792,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 2860,
          "cdna_start": 176,
          "cds_end": null,
          "cds_length": 2379,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000257700.7",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_021930.6",
          "protein_coding": true,
          "protein_id": "ENSP00000257700.2",
          "strand": true,
          "transcript": "ENST00000257700.7",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 827,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2984,
          "cdna_start": 198,
          "cds_end": null,
          "cds_length": 2484,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000967558.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000637617.1",
          "strand": true,
          "transcript": "ENST00000967558.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 826,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2819,
          "cdna_start": 198,
          "cds_end": null,
          "cds_length": 2481,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000899074.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000569133.1",
          "strand": true,
          "transcript": "ENST00000899074.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 810,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2919,
          "cdna_start": 176,
          "cds_end": null,
          "cds_length": 2433,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000899073.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000569132.1",
          "strand": true,
          "transcript": "ENST00000899073.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 802,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2901,
          "cdna_start": 188,
          "cds_end": null,
          "cds_length": 2409,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000899072.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000569131.1",
          "strand": true,
          "transcript": "ENST00000899072.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 784,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2858,
          "cdna_start": 198,
          "cds_end": null,
          "cds_length": 2355,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000899070.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000569129.1",
          "strand": true,
          "transcript": "ENST00000899070.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 784,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2844,
          "cdna_start": 186,
          "cds_end": null,
          "cds_length": 2355,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000930235.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000600294.1",
          "strand": true,
          "transcript": "ENST00000930235.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 779,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2814,
          "cdna_start": 168,
          "cds_end": null,
          "cds_length": 2340,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000967559.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000637618.1",
          "strand": true,
          "transcript": "ENST00000967559.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 764,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2802,
          "cdna_start": 201,
          "cds_end": null,
          "cds_length": 2295,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000930233.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000600292.1",
          "strand": true,
          "transcript": "ENST00000930233.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 752,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2761,
          "cdna_start": 198,
          "cds_end": null,
          "cds_length": 2259,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000930234.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000600293.1",
          "strand": true,
          "transcript": "ENST00000930234.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 750,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2731,
          "cdna_start": 174,
          "cds_end": null,
          "cds_length": 2253,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000930237.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000600296.1",
          "strand": true,
          "transcript": "ENST00000930237.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 738,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2697,
          "cdna_start": 176,
          "cds_end": null,
          "cds_length": 2217,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000930236.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000600295.1",
          "strand": true,
          "transcript": "ENST00000930236.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 734,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2699,
          "cdna_start": 198,
          "cds_end": null,
          "cds_length": 2205,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000899071.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000569130.1",
          "strand": true,
          "transcript": "ENST00000899071.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 692,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2611,
          "cdna_start": 217,
          "cds_end": null,
          "cds_length": 2079,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000930232.1",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000600291.1",
          "strand": true,
          "transcript": "ENST00000930232.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 142,
          "aa_ref": "D",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 563,
          "cdna_start": 193,
          "cds_end": null,
          "cds_length": 431,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 5,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000493041.5",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.61G>A",
          "hgvs_p": "p.Asp21Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000417954.1",
          "strand": true,
          "transcript": "ENST00000493041.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 714,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2723,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2145,
          "cds_start": null,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "NM_001346599.2",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.-37G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001333528.1",
          "strand": true,
          "transcript": "NM_001346599.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 484,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2858,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1455,
          "cds_start": null,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "NM_001346601.2",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.-862G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001333530.1",
          "strand": true,
          "transcript": "NM_001346601.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 451,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2856,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1356,
          "cds_start": null,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_count": 15,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "NM_001346600.2",
          "gene_hgnc_id": 21876,
          "gene_symbol": "RINT1",
          "hgvs_c": "c.-959G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.