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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 8-18062307-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=18062307&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "8",
      "pos": 18062307,
      "ref": "T",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "ENST00000637790.2",
      "consequences": [
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.620A>G",
          "hgvs_p": "p.Tyr207Cys",
          "transcript": "NM_177924.5",
          "protein_id": "NP_808592.2",
          "transcript_support_level": null,
          "aa_start": 207,
          "aa_end": null,
          "aa_length": 395,
          "cds_start": 620,
          "cds_end": null,
          "cds_length": 1188,
          "cdna_start": 669,
          "cdna_end": null,
          "cdna_length": 2779,
          "mane_select": "ENST00000637790.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.620A>G",
          "hgvs_p": "p.Tyr207Cys",
          "transcript": "ENST00000637790.2",
          "protein_id": "ENSP00000490272.1",
          "transcript_support_level": 1,
          "aa_start": 207,
          "aa_end": null,
          "aa_length": 395,
          "cds_start": 620,
          "cds_end": null,
          "cds_length": 1188,
          "cdna_start": 669,
          "cdna_end": null,
          "cdna_length": 2779,
          "mane_select": "NM_177924.5",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.668A>G",
          "hgvs_p": "p.Tyr223Cys",
          "transcript": "ENST00000381733.9",
          "protein_id": "ENSP00000371152.4",
          "transcript_support_level": 1,
          "aa_start": 223,
          "aa_end": null,
          "aa_length": 411,
          "cds_start": 668,
          "cds_end": null,
          "cds_length": 1236,
          "cdna_start": 865,
          "cdna_end": null,
          "cdna_length": 2512,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.602A>G",
          "hgvs_p": "p.Tyr201Cys",
          "transcript": "ENST00000314146.10",
          "protein_id": "ENSP00000326970.10",
          "transcript_support_level": 1,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 389,
          "cds_start": 602,
          "cds_end": null,
          "cds_length": 1170,
          "cdna_start": 786,
          "cdna_end": null,
          "cdna_length": 1690,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.*1138A>G",
          "hgvs_p": null,
          "transcript": "ENST00000637244.1",
          "protein_id": "ENSP00000490188.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3151,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.*1138A>G",
          "hgvs_p": null,
          "transcript": "ENST00000637244.1",
          "protein_id": "ENSP00000490188.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3151,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.668A>G",
          "hgvs_p": "p.Tyr223Cys",
          "transcript": "NM_004315.6",
          "protein_id": "NP_004306.3",
          "transcript_support_level": null,
          "aa_start": 223,
          "aa_end": null,
          "aa_length": 411,
          "cds_start": 668,
          "cds_end": null,
          "cds_length": 1236,
          "cdna_start": 828,
          "cdna_end": null,
          "cdna_length": 2938,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.614A>G",
          "hgvs_p": "p.Tyr205Cys",
          "transcript": "ENST00000637636.1",
          "protein_id": "ENSP00000490112.1",
          "transcript_support_level": 5,
          "aa_start": 205,
          "aa_end": null,
          "aa_length": 393,
          "cds_start": 614,
          "cds_end": null,
          "cds_length": 1182,
          "cdna_start": 869,
          "cdna_end": null,
          "cdna_length": 2218,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.602A>G",
          "hgvs_p": "p.Tyr201Cys",
          "transcript": "NM_001127505.3",
          "protein_id": "NP_001120977.1",
          "transcript_support_level": null,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 389,
          "cds_start": 602,
          "cds_end": null,
          "cds_length": 1170,
          "cdna_start": 762,
          "cdna_end": null,
          "cdna_length": 2872,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.593A>G",
          "hgvs_p": "p.Tyr198Cys",
          "transcript": "ENST00000637991.1",
          "protein_id": "ENSP00000489901.1",
          "transcript_support_level": 5,
          "aa_start": 198,
          "aa_end": null,
          "aa_length": 386,
          "cds_start": 593,
          "cds_end": null,
          "cds_length": 1161,
          "cdna_start": 753,
          "cdna_end": null,
          "cdna_length": 2399,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
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          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.563A>G",
          "hgvs_p": "p.Tyr188Cys",
          "transcript": "ENST00000636171.1",
          "protein_id": "ENSP00000489761.1",
          "transcript_support_level": 5,
          "aa_start": 188,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 563,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": 647,
          "cdna_end": null,
          "cdna_length": 2283,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.560A>G",
          "hgvs_p": "p.Tyr187Cys",
          "transcript": "ENST00000636577.1",
          "protein_id": "ENSP00000490027.1",
          "transcript_support_level": 5,
          "aa_start": 187,
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          "aa_length": 375,
          "cds_start": 560,
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          "cds_length": 1128,
          "cdna_start": 598,
          "cdna_end": null,
          "cdna_length": 2129,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
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          "exon_count": 14,
          "intron_rank": null,
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          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.557A>G",
          "hgvs_p": "p.Tyr186Cys",
          "transcript": "ENST00000637528.1",
          "protein_id": "ENSP00000490801.1",
          "transcript_support_level": 5,
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          "cds_start": 557,
          "cds_end": null,
          "cds_length": 1125,
          "cdna_start": 572,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.545A>G",
          "hgvs_p": "p.Tyr182Cys",
          "transcript": "ENST00000520781.6",
          "protein_id": "ENSP00000427751.1",
          "transcript_support_level": 2,
          "aa_start": 182,
          "aa_end": null,
          "aa_length": 370,
          "cds_start": 545,
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          "cds_length": 1113,
          "cdna_start": 595,
          "cdna_end": null,
          "cdna_length": 2245,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
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          "intron_rank": null,
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          "gene_symbol": "ASAH1",
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          "hgvs_c": "c.536A>G",
          "hgvs_p": "p.Tyr179Cys",
          "transcript": "ENST00000636815.1",
          "protein_id": "ENSP00000490270.1",
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          "cds_start": 536,
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          "cdna_start": 537,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.533A>G",
          "hgvs_p": "p.Tyr178Cys",
          "transcript": "ENST00000636997.1",
          "protein_id": "ENSP00000490093.1",
          "transcript_support_level": 5,
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          "aa_end": null,
          "aa_length": 366,
          "cds_start": 533,
          "cds_end": null,
          "cds_length": 1101,
          "cdna_start": 575,
          "cdna_end": null,
          "cdna_length": 1774,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
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          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.668A>G",
          "hgvs_p": "p.Tyr223Cys",
          "transcript": "ENST00000636455.1",
          "protein_id": "ENSP00000490502.1",
          "transcript_support_level": 5,
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          "aa_end": null,
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          "cds_start": 668,
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          "cdna_start": 847,
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          "cdna_length": 1777,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
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          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.425A>G",
          "hgvs_p": "p.Tyr142Cys",
          "transcript": "NM_001363743.2",
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          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
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          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.425A>G",
          "hgvs_p": "p.Tyr142Cys",
          "transcript": "ENST00000636691.1",
          "protein_id": "ENSP00000490725.1",
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          "cdna_start": 829,
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          "cdna_length": 2472,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
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          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.425A>G",
          "hgvs_p": "p.Tyr142Cys",
          "transcript": "ENST00000637922.1",
          "protein_id": "ENSP00000490071.1",
          "transcript_support_level": 5,
          "aa_start": 142,
          "aa_end": null,
          "aa_length": 330,
          "cds_start": 425,
          "cds_end": null,
          "cds_length": 993,
          "cdna_start": 657,
          "cdna_end": null,
          "cdna_length": 2297,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
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          "consequences": [
            "downstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.*463A>G",
          "hgvs_p": null,
          "transcript": "ENST00000523593.6",
          "protein_id": "ENSP00000490700.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 586,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "downstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.*391A>G",
          "hgvs_p": null,
          "transcript": "ENST00000636299.1",
          "protein_id": "ENSP00000490202.1",
          "transcript_support_level": 4,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 543,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        }
      ],
      "gene_symbol": "ASAH1",
      "gene_hgnc_id": 735,
      "dbsnp": "rs150268016",
      "frequency_reference_population": 0.000002736229,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 4,
      "gnomad_exomes_af": 0.00000273623,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 4,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.9501045942306519,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.019999999552965164,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.929,
      "revel_prediction": "Pathogenic",
      "alphamissense_score": 0.4467,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.42,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 7.67,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.02,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 6,
      "acmg_classification": "Likely_pathogenic",
      "acmg_criteria": "PM2,PP3_Strong",
      "acmg_by_gene": [
        {
          "score": 6,
          "benign_score": 0,
          "pathogenic_score": 6,
          "criteria": [
            "PM2",
            "PP3_Strong"
          ],
          "verdict": "Likely_pathogenic",
          "transcript": "ENST00000637790.2",
          "gene_symbol": "ASAH1",
          "hgnc_id": 735,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.620A>G",
          "hgvs_p": "p.Tyr207Cys"
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}