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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 8-18084767-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=18084767&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "8",
      "pos": 18084767,
      "ref": "C",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_004315.6",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.35G>C",
          "hgvs_p": "p.Arg12Pro",
          "transcript": "ENST00000381733.9",
          "protein_id": "ENSP00000371152.4",
          "transcript_support_level": 1,
          "aa_start": 12,
          "aa_end": null,
          "aa_length": 411,
          "cds_start": 35,
          "cds_end": null,
          "cds_length": 1236,
          "cdna_start": 232,
          "cdna_end": null,
          "cdna_length": 2512,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.35G>C",
          "hgvs_p": "p.Arg12Pro",
          "transcript": "ENST00000314146.10",
          "protein_id": "ENSP00000326970.10",
          "transcript_support_level": 1,
          "aa_start": 12,
          "aa_end": null,
          "aa_length": 389,
          "cds_start": 35,
          "cds_end": null,
          "cds_length": 1170,
          "cdna_start": 219,
          "cdna_end": null,
          "cdna_length": 1690,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.35G>C",
          "hgvs_p": null,
          "transcript": "ENST00000637244.1",
          "protein_id": "ENSP00000490188.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3151,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.35G>C",
          "hgvs_p": "p.Arg12Pro",
          "transcript": "NM_004315.6",
          "protein_id": "NP_004306.3",
          "transcript_support_level": null,
          "aa_start": 12,
          "aa_end": null,
          "aa_length": 411,
          "cds_start": 35,
          "cds_end": null,
          "cds_length": 1236,
          "cdna_start": 195,
          "cdna_end": null,
          "cdna_length": 2938,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.35G>C",
          "hgvs_p": "p.Arg12Pro",
          "transcript": "NM_001127505.3",
          "protein_id": "NP_001120977.1",
          "transcript_support_level": null,
          "aa_start": 12,
          "aa_end": null,
          "aa_length": 389,
          "cds_start": 35,
          "cds_end": null,
          "cds_length": 1170,
          "cdna_start": 195,
          "cdna_end": null,
          "cdna_length": 2872,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.35G>C",
          "hgvs_p": "p.Arg12Pro",
          "transcript": "ENST00000637991.1",
          "protein_id": "ENSP00000489901.1",
          "transcript_support_level": 5,
          "aa_start": 12,
          "aa_end": null,
          "aa_length": 386,
          "cds_start": 35,
          "cds_end": null,
          "cds_length": 1161,
          "cdna_start": 195,
          "cdna_end": null,
          "cdna_length": 2399,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.35G>C",
          "hgvs_p": "p.Arg12Pro",
          "transcript": "ENST00000636455.1",
          "protein_id": "ENSP00000490502.1",
          "transcript_support_level": 5,
          "aa_start": 12,
          "aa_end": null,
          "aa_length": 341,
          "cds_start": 35,
          "cds_end": null,
          "cds_length": 1026,
          "cdna_start": 214,
          "cdna_end": null,
          "cdna_length": 1777,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.35G>C",
          "hgvs_p": "p.Arg12Pro",
          "transcript": "ENST00000636537.1",
          "protein_id": "ENSP00000489914.1",
          "transcript_support_level": 2,
          "aa_start": 12,
          "aa_end": null,
          "aa_length": 191,
          "cds_start": 35,
          "cds_end": null,
          "cds_length": 576,
          "cdna_start": 205,
          "cdna_end": null,
          "cdna_length": 1056,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.35G>C",
          "hgvs_p": "p.Arg12Pro",
          "transcript": "ENST00000637536.1",
          "protein_id": "ENSP00000490464.1",
          "transcript_support_level": 4,
          "aa_start": 12,
          "aa_end": null,
          "aa_length": 186,
          "cds_start": 35,
          "cds_end": null,
          "cds_length": 561,
          "cdna_start": 36,
          "cdna_end": null,
          "cdna_length": 562,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "c.35G>C",
          "hgvs_p": "p.Arg12Pro",
          "transcript": "ENST00000637792.1",
          "protein_id": "ENSP00000490423.1",
          "transcript_support_level": 4,
          "aa_start": 12,
          "aa_end": null,
          "aa_length": 139,
          "cds_start": 35,
          "cds_end": null,
          "cds_length": 422,
          "cdna_start": 194,
          "cdna_end": null,
          "cdna_length": 581,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1-AS1",
          "gene_hgnc_id": 55603,
          "hgvs_c": "n.398C>G",
          "hgvs_p": null,
          "transcript": "ENST00000505114.7",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1035,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1-AS1",
          "gene_hgnc_id": 55603,
          "hgvs_c": "n.382C>G",
          "hgvs_p": null,
          "transcript": "ENST00000517798.3",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 1559,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.35G>C",
          "hgvs_p": null,
          "transcript": "ENST00000520051.2",
          "protein_id": "ENSP00000490132.1",
          "transcript_support_level": 5,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1-AS1",
          "gene_hgnc_id": 55603,
          "hgvs_c": "n.357C>G",
          "hgvs_p": null,
          "transcript": "ENST00000521775.6",
          "protein_id": null,
          "transcript_support_level": 4,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cdna_length": 2942,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.35G>C",
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          "transcript": "ENST00000636050.1",
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          "feature": null
        },
        {
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 1,
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          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.35G>C",
          "hgvs_p": null,
          "transcript": "ENST00000636299.1",
          "protein_id": "ENSP00000490202.1",
          "transcript_support_level": 4,
          "aa_start": null,
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          "cdna_length": 543,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.35G>C",
          "hgvs_p": null,
          "transcript": "ENST00000636715.1",
          "protein_id": "ENSP00000490876.1",
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          "cdna_length": 1025,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
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          "hgvs_c": "n.163G>C",
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        },
        {
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          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.35G>C",
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          "mane_select": null,
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        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.35G>C",
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          "transcript": "ENST00000637429.1",
          "protein_id": "ENSP00000490522.1",
          "transcript_support_level": 5,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 2558,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1",
          "gene_hgnc_id": 735,
          "hgvs_c": "n.35G>C",
          "hgvs_p": null,
          "transcript": "ENST00000637484.1",
          "protein_id": "ENSP00000490837.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
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        },
        {
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          "protein_coding": false,
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          "consequences": [
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          "exon_count": 3,
          "intron_rank": null,
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          "gene_symbol": "ASAH1-AS1",
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          "hgvs_c": "n.-229C>G",
          "hgvs_p": null,
          "transcript": "ENST00000839726.1",
          "protein_id": null,
          "transcript_support_level": null,
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          "aa_length": null,
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          "cds_length": null,
          "cdna_start": null,
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        },
        {
          "aa_ref": null,
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          "protein_coding": false,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
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          "exon_count": 4,
          "intron_rank": null,
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          "gene_symbol": "ASAH1-AS1",
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          "hgvs_c": "n.-80C>G",
          "hgvs_p": null,
          "transcript": "ENST00000839731.1",
          "protein_id": null,
          "transcript_support_level": null,
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          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 516,
          "mane_select": null,
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        },
        {
          "aa_ref": null,
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          "protein_coding": false,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
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          "gene_symbol": "ASAH1-AS1",
          "gene_hgnc_id": 55603,
          "hgvs_c": "n.-101C>G",
          "hgvs_p": null,
          "transcript": "NR_125429.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 2309,
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        },
        {
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          "protein_coding": false,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
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          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ASAH1-AS1",
          "gene_hgnc_id": 55603,
          "hgvs_c": "n.-101C>G",
          "hgvs_p": null,
          "transcript": "NR_125430.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 451,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        }
      ],
      "gene_symbol": "ASAH1",
      "gene_hgnc_id": 735,
      "dbsnp": "rs147896487",
      "frequency_reference_population": 0.0012053539,
      "hom_count_reference_population": 7,
      "allele_count_reference_population": 1945,
      "gnomad_exomes_af": 0.0011777,
      "gnomad_genomes_af": 0.00147063,
      "gnomad_exomes_ac": 1721,
      "gnomad_genomes_ac": 224,
      "gnomad_exomes_homalt": 4,
      "gnomad_genomes_homalt": 3,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.0040474534034729,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": null,
      "splice_prediction_selected": null,
      "splice_source_selected": null,
      "revel_score": 0.086,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.1443,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.47,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -1.515,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": null,
      "spliceai_max_prediction": null,
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -13,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6,BS1,BS2",
      "acmg_by_gene": [
        {
          "score": -13,
          "benign_score": 13,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6",
            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_004315.6",
          "gene_symbol": "ASAH1",
          "hgnc_id": 735,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.35G>C",
          "hgvs_p": "p.Arg12Pro"
        },
        {
          "score": -9,
          "benign_score": 9,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000505114.7",
          "gene_symbol": "ASAH1-AS1",
          "hgnc_id": 55603,
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.398C>G",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "ASAH1-related sphingolipidosis,Self-limited epilepsy with centrotemporal spikes,not provided,not specified",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:1 LB:2 B:1",
      "phenotype_combined": "Self-limited epilepsy with centrotemporal spikes|not provided|not specified|ASAH1-related sphingolipidosis",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
    }
  ],
  "message": null
}