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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 8-22408352-G-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=22408352&ref=G&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "8",
      "pos": 22408352,
      "ref": "G",
      "alt": "T",
      "effect": "stop_gained",
      "transcript": "NM_001351657.2",
      "consequences": [
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "NM_001128431.4",
          "protein_id": "NP_001121903.1",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 492,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1479,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000381237.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001128431.4"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "NM_015359.6",
          "protein_id": "NP_056174.2",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 492,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1479,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": "ENST00000359741.10",
          "biotype": "protein_coding",
          "feature": "NM_015359.6"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "ENST00000359741.10",
          "protein_id": "ENSP00000352779.5",
          "transcript_support_level": 2,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 492,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1479,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": "NM_015359.6",
          "biotype": "protein_coding",
          "feature": "ENST00000359741.10"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "ENST00000381237.6",
          "protein_id": "ENSP00000370635.1",
          "transcript_support_level": 1,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 492,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1479,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001128431.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000381237.6"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "ENST00000240095.10",
          "protein_id": "ENSP00000240095.6",
          "transcript_support_level": 1,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 481,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1446,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000240095.10"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "ENST00000851588.1",
          "protein_id": "ENSP00000521647.1",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 522,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1569,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000851588.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "ENST00000851596.1",
          "protein_id": "ENSP00000521655.1",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 515,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1548,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000851596.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.343G>T",
          "hgvs_p": "p.Glu115*",
          "transcript": "NM_001351657.2",
          "protein_id": "NP_001338586.1",
          "transcript_support_level": null,
          "aa_start": 115,
          "aa_end": null,
          "aa_length": 502,
          "cds_start": 343,
          "cds_end": null,
          "cds_length": 1509,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351657.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.343G>T",
          "hgvs_p": "p.Glu115*",
          "transcript": "NM_001351658.2",
          "protein_id": "NP_001338587.1",
          "transcript_support_level": null,
          "aa_start": 115,
          "aa_end": null,
          "aa_length": 502,
          "cds_start": 343,
          "cds_end": null,
          "cds_length": 1509,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351658.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.343G>T",
          "hgvs_p": "p.Glu115*",
          "transcript": "NM_001351659.2",
          "protein_id": "NP_001338588.1",
          "transcript_support_level": null,
          "aa_start": 115,
          "aa_end": null,
          "aa_length": 502,
          "cds_start": 343,
          "cds_end": null,
          "cds_length": 1509,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351659.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.340G>T",
          "hgvs_p": "p.Glu114*",
          "transcript": "ENST00000851578.1",
          "protein_id": "ENSP00000521637.1",
          "transcript_support_level": null,
          "aa_start": 114,
          "aa_end": null,
          "aa_length": 501,
          "cds_start": 340,
          "cds_end": null,
          "cds_length": 1506,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000851578.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "ENST00000851587.1",
          "protein_id": "ENSP00000521646.1",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 501,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1506,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000851587.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "ENST00000851590.1",
          "protein_id": "ENSP00000521649.1",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 501,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1506,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000851590.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "ENST00000851617.1",
          "protein_id": "ENSP00000521676.1",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 501,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1506,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000851617.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "ENST00000941289.1",
          "protein_id": "ENSP00000611348.1",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 501,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1506,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000941289.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "NM_001135153.3",
          "protein_id": "NP_001128625.1",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 492,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1479,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001135153.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "NM_001351655.2",
          "protein_id": "NP_001338584.1",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 492,
          "cds_start": 313,
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          "cds_length": 1479,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001351655.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
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            "stop_gained"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "NM_001351656.2",
          "protein_id": "NP_001338585.1",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 492,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1479,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001351656.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "NM_001351660.2",
          "protein_id": "NP_001338589.1",
          "transcript_support_level": null,
          "aa_start": 105,
          "aa_end": null,
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          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1479,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351660.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SLC39A14",
          "gene_hgnc_id": 20858,
          "hgvs_c": "c.313G>T",
          "hgvs_p": "p.Glu105*",
          "transcript": "ENST00000289952.9",
          "protein_id": "ENSP00000289952.5",
          "transcript_support_level": 2,
          "aa_start": 105,
          "aa_end": null,
          "aa_length": 492,
          "cds_start": 313,
          "cds_end": null,
          "cds_length": 1479,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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      "computational_score_selected": 0.05000000074505806,
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      "clinvar_classification": "Pathogenic",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "O:1",
      "phenotype_combined": "Hypermanganesemia with dystonia 2",
      "pathogenicity_classification_combined": "Pathogenic",
      "custom_annotations": null
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  "message": null
}