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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 8-93709810-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=93709810&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PVS1",
            "PM2",
            "PP5_Very_Strong"
          ],
          "effects": [
            "stop_gained"
          ],
          "gene_symbol": "CIBAR1",
          "hgnc_id": 30452,
          "hgvs_c": "c.478C>T",
          "hgvs_p": "p.Arg160*",
          "inheritance_mode": "AR",
          "pathogenic_score": 18,
          "score": 18,
          "transcript": "NM_145269.5",
          "verdict": "Pathogenic"
        }
      ],
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1,PM2,PP5_Very_Strong",
      "acmg_score": 18,
      "allele_count_reference_population": 13,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Pathogenic",
      "bayesdelnoaf_score": 0.63,
      "chr": "8",
      "clinvar_classification": "Pathogenic",
      "clinvar_disease": " postaxial, type A9,Polydactyly,Postaxial polydactyly type A",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:2",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.08500000089406967,
      "computational_source_selected": "REVEL",
      "consequences": [
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 289,
          "aa_ref": "R",
          "aa_start": 160,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4198,
          "cdna_start": 576,
          "cds_end": null,
          "cds_length": 870,
          "cds_start": 478,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 9,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NM_145269.5",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.478C>T",
          "hgvs_p": "p.Arg160*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000518322.6",
          "protein_coding": true,
          "protein_id": "NP_660312.2",
          "strand": true,
          "transcript": "NM_145269.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 289,
          "aa_ref": "R",
          "aa_start": 160,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 4198,
          "cdna_start": 576,
          "cds_end": null,
          "cds_length": 870,
          "cds_start": 478,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 9,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000518322.6",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.478C>T",
          "hgvs_p": "p.Arg160*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_145269.5",
          "protein_coding": true,
          "protein_id": "ENSP00000429367.1",
          "strand": true,
          "transcript": "ENST00000518322.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 281,
          "aa_ref": "R",
          "aa_start": 124,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1108,
          "cdna_start": 483,
          "cds_end": null,
          "cds_length": 846,
          "cds_start": 370,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 8,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000933184.1",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.370C>T",
          "hgvs_p": "p.Arg124*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000603243.1",
          "strand": true,
          "transcript": "ENST00000933184.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 251,
          "aa_ref": "R",
          "aa_start": 160,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4084,
          "cdna_start": 576,
          "cds_end": null,
          "cds_length": 756,
          "cds_start": 478,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NM_001283034.2",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.478C>T",
          "hgvs_p": "p.Arg160*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001269963.1",
          "strand": true,
          "transcript": "NM_001283034.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 251,
          "aa_ref": "R",
          "aa_start": 160,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 914,
          "cdna_start": 544,
          "cds_end": null,
          "cds_length": 756,
          "cds_start": 478,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000423990.6",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.478C>T",
          "hgvs_p": "p.Arg160*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000401774.2",
          "strand": true,
          "transcript": "ENST00000423990.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 215,
          "aa_ref": "R",
          "aa_start": 124,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1716,
          "cdna_start": 485,
          "cds_end": null,
          "cds_length": 648,
          "cds_start": 370,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 6,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000933183.1",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.370C>T",
          "hgvs_p": "p.Arg124*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000603242.1",
          "strand": true,
          "transcript": "ENST00000933183.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 186,
          "aa_ref": "R",
          "aa_start": 170,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 563,
          "cdna_start": 509,
          "cds_end": null,
          "cds_length": 562,
          "cds_start": 508,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 6,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000523453.5",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.508C>T",
          "hgvs_p": "p.Arg170*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000430812.1",
          "strand": true,
          "transcript": "ENST00000523453.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 167,
          "aa_ref": "R",
          "aa_start": 168,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 582,
          "cdna_start": 579,
          "cds_end": null,
          "cds_length": 505,
          "cds_start": 502,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 7,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000522803.5",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.502C>T",
          "hgvs_p": "p.Arg168*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000428739.1",
          "strand": true,
          "transcript": "ENST00000522803.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 134,
          "aa_ref": "R",
          "aa_start": 5,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 827,
          "cdna_start": 286,
          "cds_end": null,
          "cds_length": 405,
          "cds_start": 13,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 5,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000517718.5",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.13C>T",
          "hgvs_p": "p.Arg5*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000428874.1",
          "strand": true,
          "transcript": "ENST00000517718.5",
          "transcript_support_level": 3
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 134,
          "aa_ref": "R",
          "aa_start": 5,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 780,
          "cdna_start": 168,
          "cds_end": null,
          "cds_length": 405,
          "cds_start": 13,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 5,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000521641.5",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.13C>T",
          "hgvs_p": "p.Arg5*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000428751.1",
          "strand": true,
          "transcript": "ENST00000521641.5",
          "transcript_support_level": 3
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 114,
          "aa_ref": "R",
          "aa_start": 5,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 538,
          "cdna_start": 48,
          "cds_end": null,
          "cds_length": 345,
          "cds_start": 13,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 3,
          "exon_rank": 1,
          "exon_rank_end": null,
          "feature": "ENST00000519679.5",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.13C>T",
          "hgvs_p": "p.Arg5*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000429955.1",
          "strand": true,
          "transcript": "ENST00000519679.5",
          "transcript_support_level": 4
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 109,
          "aa_ref": "R",
          "aa_start": 90,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 552,
          "cdna_start": 489,
          "cds_end": null,
          "cds_length": 331,
          "cds_start": 268,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 6,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000518829.5",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.268C>T",
          "hgvs_p": "p.Arg90*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000428446.1",
          "strand": true,
          "transcript": "ENST00000518829.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 218,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1697,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 657,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 6,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000949630.1",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "c.330+6122C>T",
          "hgvs_p": null,
          "intron_rank": 3,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000619689.1",
          "strand": true,
          "transcript": "ENST00000949630.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1179,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 9,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000359421.9",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "n.*60C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000352391.5",
          "strand": true,
          "transcript": "ENST00000359421.9",
          "transcript_support_level": 3
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1284,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 10,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000452913.6",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "n.478C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000391671.2",
          "strand": true,
          "transcript": "ENST00000452913.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1943,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 10,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000518116.5",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "n.478C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000428065.1",
          "strand": true,
          "transcript": "ENST00000518116.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3003,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 9,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000523577.5",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "n.1658C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000523577.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4312,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 10,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NR_104267.2",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "n.576C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "NR_104267.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4284,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 10,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NR_104268.2",
          "gene_hgnc_id": 30452,
          "gene_symbol": "CIBAR1",
          "hgvs_c": "n.576C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "NR_104268.2",
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.