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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-111371352-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=111371352&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 111371352,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000684092.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 50,
"intron_rank": 43,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4737+269A>G",
"hgvs_p": null,
"transcript": "NM_001364929.1",
"protein_id": "NP_001351858.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1839,
"cds_start": -4,
"cds_end": null,
"cds_length": 5520,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7215,
"mane_select": "ENST00000684092.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 50,
"intron_rank": 43,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4737+269A>G",
"hgvs_p": null,
"transcript": "ENST00000684092.1",
"protein_id": "ENSP00000507419.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1839,
"cds_start": -4,
"cds_end": null,
"cds_length": 5520,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7215,
"mane_select": "NM_001364929.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 51,
"intron_rank": 44,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.5271+269A>G",
"hgvs_p": null,
"transcript": "ENST00000259335.8",
"protein_id": "ENSP00000259335.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2017,
"cds_start": -4,
"cds_end": null,
"cds_length": 6054,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7391,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 49,
"intron_rank": 42,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4755+269A>G",
"hgvs_p": null,
"transcript": "NM_001364931.1",
"protein_id": "NP_001351860.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1845,
"cds_start": -4,
"cds_end": null,
"cds_length": 5538,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6902,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 49,
"intron_rank": 42,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4737+269A>G",
"hgvs_p": null,
"transcript": "NM_001363756.2",
"protein_id": "NP_001350685.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1839,
"cds_start": -4,
"cds_end": null,
"cds_length": 5520,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7111,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 50,
"intron_rank": 43,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4737+269A>G",
"hgvs_p": null,
"transcript": "NM_001364930.1",
"protein_id": "NP_001351859.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1839,
"cds_start": -4,
"cds_end": null,
"cds_length": 5520,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7006,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 49,
"intron_rank": 42,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4737+269A>G",
"hgvs_p": null,
"transcript": "ENST00000338205.9",
"protein_id": "ENSP00000339889.5",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1839,
"cds_start": -4,
"cds_end": null,
"cds_length": 5520,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7078,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.168+269A>G",
"hgvs_p": null,
"transcript": "ENST00000374383.1",
"protein_id": "ENSP00000363504.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 142,
"cds_start": -4,
"cds_end": null,
"cds_length": 429,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 573,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 50,
"intron_rank": 43,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4737+269A>G",
"hgvs_p": null,
"transcript": "XM_005251853.4",
"protein_id": "XP_005251910.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1839,
"cds_start": -4,
"cds_end": null,
"cds_length": 5520,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7020,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 50,
"intron_rank": 43,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4737+269A>G",
"hgvs_p": null,
"transcript": "XM_047423105.1",
"protein_id": "XP_047279061.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1839,
"cds_start": -4,
"cds_end": null,
"cds_length": 5520,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7040,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 49,
"intron_rank": 42,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4755+269A>G",
"hgvs_p": null,
"transcript": "XM_011518422.4",
"protein_id": "XP_011516724.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1802,
"cds_start": -4,
"cds_end": null,
"cds_length": 5409,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6830,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 49,
"intron_rank": 42,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4737+269A>G",
"hgvs_p": null,
"transcript": "XM_047423106.1",
"protein_id": "XP_047279062.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1796,
"cds_start": -4,
"cds_end": null,
"cds_length": 5391,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7039,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 49,
"intron_rank": 42,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4581+269A>G",
"hgvs_p": null,
"transcript": "XM_047423107.1",
"protein_id": "XP_047279063.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1787,
"cds_start": -4,
"cds_end": null,
"cds_length": 5364,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6916,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 49,
"intron_rank": 42,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.4581+269A>G",
"hgvs_p": null,
"transcript": "XM_047423108.1",
"protein_id": "XP_047279064.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1744,
"cds_start": -4,
"cds_end": null,
"cds_length": 5235,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6844,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": 32,
"intron_rank_end": null,
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"hgvs_c": "c.3486+269A>G",
"hgvs_p": null,
"transcript": "XM_047423109.1",
"protein_id": "XP_047279065.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1422,
"cds_start": -4,
"cds_end": null,
"cds_length": 4269,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5765,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "ECPAS",
"gene_hgnc_id": 29020,
"dbsnp": "rs2282181",
"frequency_reference_population": 0.055700842,
"hom_count_reference_population": 571,
"allele_count_reference_population": 8477,
"gnomad_exomes_af": null,
"gnomad_genomes_af": 0.0557008,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": 8477,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": 571,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.8999999761581421,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.9,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -2.523,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000684092.1",
"gene_symbol": "ECPAS",
"hgnc_id": 29020,
"effects": [
"intron_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.4737+269A>G",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}