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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 9-121310319-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=121310319&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "9",
      "pos": 121310319,
      "ref": "C",
      "alt": "T",
      "effect": "intron_variant",
      "transcript": "ENST00000432226.7",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "n.1949C>T",
          "hgvs_p": null,
          "transcript": "ENST00000485767.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6454,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.352-365C>T",
          "hgvs_p": null,
          "transcript": "NM_198252.3",
          "protein_id": "NP_937895.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 731,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2196,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2595,
          "mane_select": "ENST00000432226.7",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.352-365C>T",
          "hgvs_p": null,
          "transcript": "ENST00000432226.7",
          "protein_id": "ENSP00000404226.2",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 731,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2196,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2595,
          "mane_select": "NM_198252.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.505-365C>T",
          "hgvs_p": null,
          "transcript": "ENST00000373818.8",
          "protein_id": "ENSP00000362924.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 782,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2349,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2657,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.505-365C>T",
          "hgvs_p": null,
          "transcript": "NM_000177.5",
          "protein_id": "NP_000168.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 782,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2349,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2619,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.460-365C>T",
          "hgvs_p": null,
          "transcript": "NM_001127663.2",
          "protein_id": "NP_001121135.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 767,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2304,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2707,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.460-365C>T",
          "hgvs_p": null,
          "transcript": "ENST00000449733.7",
          "protein_id": "ENSP00000409358.2",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 767,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2304,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2702,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.424-365C>T",
          "hgvs_p": null,
          "transcript": "NM_001353076.2",
          "protein_id": "NP_001340005.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 755,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2268,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2705,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.424-365C>T",
          "hgvs_p": null,
          "transcript": "ENST00000699558.1",
          "protein_id": "ENSP00000514432.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 755,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2268,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2633,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.403-365C>T",
          "hgvs_p": null,
          "transcript": "NM_001258029.2",
          "protein_id": "NP_001244958.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 748,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2247,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2525,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.403-365C>T",
          "hgvs_p": null,
          "transcript": "ENST00000394353.7",
          "protein_id": "ENSP00000377882.3",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 748,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2247,
          "cdna_start": null,
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          "cdna_length": 2311,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.385-365C>T",
          "hgvs_p": null,
          "transcript": "NM_001127666.2",
          "protein_id": "NP_001121138.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 742,
          "cds_start": -4,
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          "cdna_start": null,
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          "mane_select": null,
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 19,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.385-365C>T",
          "hgvs_p": null,
          "transcript": "NM_001127667.2",
          "protein_id": "NP_001121139.1",
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          "cds_start": -4,
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          "cdna_start": null,
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          "mane_select": null,
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          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 18,
          "intron_rank": 4,
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          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.385-365C>T",
          "hgvs_p": null,
          "transcript": "NM_001353063.2",
          "protein_id": "NP_001339992.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 2564,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
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          "strand": true,
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          ],
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          "exon_count": 20,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.385-365C>T",
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          "transcript": "NM_001353064.2",
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        {
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          "intron_rank": 6,
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          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.385-365C>T",
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          "transcript": "NM_001353065.2",
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          "mane_select": null,
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          "feature": null
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        {
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          "canonical": false,
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          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 20,
          "intron_rank": 6,
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          "gene_symbol": "GSN",
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          "hgvs_c": "c.385-365C>T",
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          "transcript": "NM_001353066.2",
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          "cdna_length": 2879,
          "mane_select": null,
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        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 18,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.385-365C>T",
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          "gene_symbol": "GSN",
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          "hgvs_c": "c.385-365C>T",
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          "transcript": "NM_001353068.2",
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        {
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          ],
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          "intron_rank": 6,
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          "gene_symbol": "GSN",
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          "hgvs_c": "c.385-365C>T",
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          "transcript": "NM_001353069.2",
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          "cdna_start": null,
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          "cdna_length": 2769,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 19,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "GSN",
          "gene_hgnc_id": 4620,
          "hgvs_c": "c.385-365C>T",
          "hgvs_p": null,
          "transcript": "NM_001353070.2",
          "protein_id": "NP_001339999.1",
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