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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-127309965-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=127309965&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 127309965,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000373387.9",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "c.220-1671C>T",
"hgvs_p": null,
"transcript": "NM_032293.5",
"protein_id": "NP_115669.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1013,
"cds_start": -4,
"cds_end": null,
"cds_length": 3042,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3552,
"mane_select": "ENST00000373387.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "c.220-1671C>T",
"hgvs_p": null,
"transcript": "ENST00000373387.9",
"protein_id": "ENSP00000362485.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1013,
"cds_start": -4,
"cds_end": null,
"cds_length": 3042,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3552,
"mane_select": "NM_032293.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "c.154-1671C>T",
"hgvs_p": null,
"transcript": "NM_001286779.2",
"protein_id": "NP_001273708.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 991,
"cds_start": -4,
"cds_end": null,
"cds_length": 2976,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3475,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "c.154-1671C>T",
"hgvs_p": null,
"transcript": "ENST00000435213.6",
"protein_id": "ENSP00000396205.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 991,
"cds_start": -4,
"cds_end": null,
"cds_length": 2976,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3599,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "c.289-1671C>T",
"hgvs_p": null,
"transcript": "ENST00000439286.5",
"protein_id": "ENSP00000400579.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 266,
"cds_start": -4,
"cds_end": null,
"cds_length": 803,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 905,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "c.154-1671C>T",
"hgvs_p": null,
"transcript": "ENST00000425970.5",
"protein_id": "ENSP00000411329.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 166,
"cds_start": -4,
"cds_end": null,
"cds_length": 501,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 831,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "c.289-1671C>T",
"hgvs_p": null,
"transcript": "ENST00000444677.5",
"protein_id": "ENSP00000411160.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 138,
"cds_start": -4,
"cds_end": null,
"cds_length": 418,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 667,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "c.289-1671C>T",
"hgvs_p": null,
"transcript": "ENST00000446764.5",
"protein_id": "ENSP00000416473.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 109,
"cds_start": -4,
"cds_end": null,
"cds_length": 330,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 523,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "n.166-1671C>T",
"hgvs_p": null,
"transcript": "ENST00000373386.6",
"protein_id": "ENSP00000362484.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3143,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "n.219-1671C>T",
"hgvs_p": null,
"transcript": "ENST00000429629.6",
"protein_id": "ENSP00000397246.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
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"cdna_length": 694,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 4,
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"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "n.*146-1671C>T",
"hgvs_p": null,
"transcript": "ENST00000441134.5",
"protein_id": "ENSP00000396319.1",
"transcript_support_level": 4,
"aa_start": null,
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},
{
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"strand": true,
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],
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"gene_symbol": "GARNL3",
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"transcript": "ENST00000453030.5",
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},
{
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],
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"gene_symbol": "GARNL3",
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},
{
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],
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"gene_symbol": "GARNL3",
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],
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},
{
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],
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},
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],
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},
{
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],
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"intron_rank": 4,
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"gene_symbol": "GARNL3",
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"hgvs_c": "c.409-1671C>T",
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"transcript": "XM_005252267.4",
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},
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],
"exon_rank": null,
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"exon_count": 31,
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"gene_symbol": "GARNL3",
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"hgvs_c": "c.367-1671C>T",
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],
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],
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},
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],
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"gene_symbol": "GARNL3",
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"hgvs_c": "c.289-1671C>T",
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"transcript": "XM_047423963.1",
"protein_id": "XP_047279919.1",
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},
{
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"strand": true,
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],
"exon_rank": null,
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"exon_count": 29,
"intron_rank": 3,
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"gene_symbol": "GARNL3",
"gene_hgnc_id": 25425,
"hgvs_c": "c.262-1671C>T",
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},
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}
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}