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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 9-14307286-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=14307286&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "9",
      "pos": 14307286,
      "ref": "G",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_001369458.1",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.265C>G",
          "hgvs_p": "p.Arg89Gly",
          "transcript": "NM_001190737.2",
          "protein_id": "NP_001177666.1",
          "transcript_support_level": null,
          "aa_start": 89,
          "aa_end": null,
          "aa_length": 494,
          "cds_start": 265,
          "cds_end": null,
          "cds_length": 1485,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000380953.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001190737.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.265C>G",
          "hgvs_p": "p.Arg89Gly",
          "transcript": "ENST00000380953.6",
          "protein_id": "ENSP00000370340.1",
          "transcript_support_level": 1,
          "aa_start": 89,
          "aa_end": null,
          "aa_length": 494,
          "cds_start": 265,
          "cds_end": null,
          "cds_length": 1485,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001190737.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000380953.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.265C>G",
          "hgvs_p": "p.Arg89Gly",
          "transcript": "ENST00000380959.7",
          "protein_id": "ENSP00000370346.3",
          "transcript_support_level": 1,
          "aa_start": 89,
          "aa_end": null,
          "aa_length": 420,
          "cds_start": 265,
          "cds_end": null,
          "cds_length": 1263,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000380959.7"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.265C>G",
          "hgvs_p": "p.Arg89Gly",
          "transcript": "ENST00000380921.3",
          "protein_id": "ENSP00000370308.3",
          "transcript_support_level": 1,
          "aa_start": 89,
          "aa_end": null,
          "aa_length": 200,
          "cds_start": 265,
          "cds_end": null,
          "cds_length": 603,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000380921.3"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.331C>G",
          "hgvs_p": "p.Arg111Gly",
          "transcript": "NM_001369458.1",
          "protein_id": "NP_001356387.1",
          "transcript_support_level": null,
          "aa_start": 111,
          "aa_end": null,
          "aa_length": 592,
          "cds_start": 331,
          "cds_end": null,
          "cds_length": 1779,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001369458.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.331C>G",
          "hgvs_p": "p.Arg111Gly",
          "transcript": "NM_001369459.1",
          "protein_id": "NP_001356388.1",
          "transcript_support_level": null,
          "aa_start": 111,
          "aa_end": null,
          "aa_length": 583,
          "cds_start": 331,
          "cds_end": null,
          "cds_length": 1752,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001369459.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.265C>G",
          "hgvs_p": "p.Arg89Gly",
          "transcript": "NM_001429577.1",
          "protein_id": "NP_001416506.1",
          "transcript_support_level": null,
          "aa_start": 89,
          "aa_end": null,
          "aa_length": 570,
          "cds_start": 265,
          "cds_end": null,
          "cds_length": 1713,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001429577.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.265C>G",
          "hgvs_p": "p.Arg89Gly",
          "transcript": "ENST00000397581.7",
          "protein_id": "ENSP00000380711.2",
          "transcript_support_level": 5,
          "aa_start": 89,
          "aa_end": null,
          "aa_length": 570,
          "cds_start": 265,
          "cds_end": null,
          "cds_length": 1713,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000397581.7"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.253C>G",
          "hgvs_p": "p.Arg85Gly",
          "transcript": "NM_001369460.1",
          "protein_id": "NP_001356389.1",
          "transcript_support_level": null,
          "aa_start": 85,
          "aa_end": null,
          "aa_length": 566,
          "cds_start": 253,
          "cds_end": null,
          "cds_length": 1701,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001369460.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.253C>G",
          "hgvs_p": "p.Arg85Gly",
          "transcript": "ENST00000646622.1",
          "protein_id": "ENSP00000496424.1",
          "transcript_support_level": null,
          "aa_start": 85,
          "aa_end": null,
          "aa_length": 566,
          "cds_start": 253,
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          "cdna_start": null,
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        {
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          "exon_count": 12,
          "intron_rank": null,
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          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.265C>G",
          "hgvs_p": "p.Arg89Gly",
          "transcript": "NM_001369461.1",
          "protein_id": "NP_001356390.1",
          "transcript_support_level": null,
          "aa_start": 89,
          "aa_end": null,
          "aa_length": 561,
          "cds_start": 265,
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          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001369461.1"
        },
        {
          "aa_ref": "R",
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          "strand": false,
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          "intron_rank": null,
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          "gene_symbol": "NFIB",
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          "hgvs_c": "c.265C>G",
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          "transcript": "ENST00000397575.7",
          "protein_id": "ENSP00000380705.3",
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          "cds_start": 265,
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        {
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          "intron_rank": null,
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          "gene_symbol": "NFIB",
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          "transcript": "NM_001369462.1",
          "protein_id": "NP_001356391.1",
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        },
        {
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          "intron_rank": null,
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          "gene_symbol": "NFIB",
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          "hgvs_c": "c.265C>G",
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          "transcript": "ENST00000877585.1",
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        {
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        {
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          "exon_count": 11,
          "intron_rank": null,
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          "gene_symbol": "NFIB",
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          "hgvs_c": "c.265C>G",
          "hgvs_p": "p.Arg89Gly",
          "transcript": "ENST00000877583.1",
          "protein_id": "ENSP00000547642.1",
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        {
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          "gene_symbol": "NFIB",
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          "hgvs_c": "c.253C>G",
          "hgvs_p": "p.Arg85Gly",
          "transcript": "NM_001369463.1",
          "protein_id": "NP_001356392.1",
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        {
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        {
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        {
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          "protein_coding": true,
          "strand": false,
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          "exon_count": 10,
          "intron_rank": null,
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          "gene_symbol": "NFIB",
          "gene_hgnc_id": 7785,
          "hgvs_c": "c.265C>G",
          "hgvs_p": "p.Arg89Gly",
          "transcript": "NM_001369464.1",
          "protein_id": "NP_001356393.1",
          "transcript_support_level": null,
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          "cds_start": 265,
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          "biotype": "protein_coding",
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        },
        {
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}