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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-165059-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=165059&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 165059,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "NM_018491.5",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1022A>G",
"hgvs_p": null,
"transcript": "NM_018491.5",
"protein_id": "NP_060961.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 395,
"cds_start": null,
"cds_end": null,
"cds_length": 1188,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1905,
"mane_select": "ENST00000356521.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_018491.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1022A>G",
"hgvs_p": null,
"transcript": "ENST00000356521.9",
"protein_id": "ENSP00000348915.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 395,
"cds_start": null,
"cds_end": null,
"cds_length": 1188,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1905,
"mane_select": "NM_018491.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000356521.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1022A>G",
"hgvs_p": null,
"transcript": "ENST00000377400.8",
"protein_id": "ENSP00000366617.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 395,
"cds_start": null,
"cds_end": null,
"cds_length": 1188,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1792,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000377400.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1022A>G",
"hgvs_p": null,
"transcript": "ENST00000382447.8",
"protein_id": "ENSP00000371885.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 376,
"cds_start": null,
"cds_end": null,
"cds_length": 1131,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1241,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000382447.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.323-1022A>G",
"hgvs_p": null,
"transcript": "ENST00000314367.14",
"protein_id": "ENSP00000323433.10",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 359,
"cds_start": null,
"cds_end": null,
"cds_length": 1080,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1771,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000314367.14"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1022A>G",
"hgvs_p": null,
"transcript": "ENST00000377447.7",
"protein_id": "ENSP00000366666.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 250,
"cds_start": null,
"cds_end": null,
"cds_length": 753,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2513,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000377447.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "n.431-2590A>G",
"hgvs_p": null,
"transcript": "ENST00000465014.6",
"protein_id": "ENSP00000482298.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1585,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000465014.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "n.1623+924A>G",
"hgvs_p": null,
"transcript": "ENST00000495302.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2553,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000495302.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "n.431-2590A>G",
"hgvs_p": null,
"transcript": "ENST00000612045.4",
"protein_id": "ENSP00000477749.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1813,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000612045.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "n.149-611A>G",
"hgvs_p": null,
"transcript": "ENST00000616803.4",
"protein_id": "ENSP00000479698.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 499,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000616803.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "n.431-1022A>G",
"hgvs_p": null,
"transcript": "ENST00000616944.4",
"protein_id": "ENSP00000482821.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
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"cds_length": null,
"cdna_start": null,
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"cdna_length": 1648,
"mane_select": null,
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"biotype": "nonsense_mediated_decay",
"feature": "ENST00000616944.4"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 4,
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"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1028A>G",
"hgvs_p": null,
"transcript": "ENST00000966634.1",
"protein_id": "ENSP00000636693.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 393,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000966634.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1022A>G",
"hgvs_p": null,
"transcript": "ENST00000905980.1",
"protein_id": "ENSP00000576039.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000905980.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 4,
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"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1022A>G",
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"transcript": "NM_001145356.2",
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"feature": "NM_001145356.2"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-2590A>G",
"hgvs_p": null,
"transcript": "NM_001399807.1",
"protein_id": "NP_001386736.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 375,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "NM_001399807.1"
},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 4,
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"gene_symbol": "ZNG1A",
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"hgvs_c": "c.431-2590A>G",
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"transcript": "ENST00000966633.1",
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000966633.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1022A>G",
"hgvs_p": null,
"transcript": "ENST00000966635.1",
"protein_id": "ENSP00000636694.1",
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000966635.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1022A>G",
"hgvs_p": null,
"transcript": "NM_001399808.1",
"protein_id": "NP_001386737.1",
"transcript_support_level": null,
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"mane_select": null,
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"feature": "NM_001399808.1"
},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1022A>G",
"hgvs_p": null,
"transcript": "ENST00000905983.1",
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"feature": "ENST00000905983.1"
},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 4,
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"gene_symbol": "ZNG1A",
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"hgvs_c": "c.431-1022A>G",
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"transcript": "ENST00000905979.1",
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
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"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.323-1022A>G",
"hgvs_p": null,
"transcript": "NM_001145355.2",
"protein_id": "NP_001138827.1",
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"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001145355.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNG1A",
"gene_hgnc_id": 17134,
"hgvs_c": "c.431-1022A>G",
"hgvs_p": null,
"transcript": "ENST00000905981.1",
"protein_id": "ENSP00000576040.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 351,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": 1530,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000905981.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
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}
],
"message": null
}