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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-93301408-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=93301408&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 93301408,
"ref": "T",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000427277.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 26,
"intron_rank_end": null,
"gene_symbol": "WNK2",
"gene_hgnc_id": 14542,
"hgvs_c": "c.6214+1259T>G",
"hgvs_p": null,
"transcript": "NM_006648.4",
"protein_id": "NP_006639.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2217,
"cds_start": -4,
"cds_end": null,
"cds_length": 6654,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7080,
"mane_select": "ENST00000427277.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 26,
"intron_rank_end": null,
"gene_symbol": "WNK2",
"gene_hgnc_id": 14542,
"hgvs_c": "c.6214+1259T>G",
"hgvs_p": null,
"transcript": "ENST00000427277.7",
"protein_id": "ENSP00000411181.4",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 2217,
"cds_start": -4,
"cds_end": null,
"cds_length": 6654,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7080,
"mane_select": "NM_006648.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 27,
"intron_rank_end": null,
"gene_symbol": "WNK2",
"gene_hgnc_id": 14542,
"hgvs_c": "c.6325+1259T>G",
"hgvs_p": null,
"transcript": "ENST00000297954.9",
"protein_id": "ENSP00000297954.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2297,
"cds_start": -4,
"cds_end": null,
"cds_length": 6894,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8338,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 25,
"intron_rank_end": null,
"gene_symbol": "WNK2",
"gene_hgnc_id": 14542,
"hgvs_c": "c.6214+1259T>G",
"hgvs_p": null,
"transcript": "ENST00000432730.6",
"protein_id": "ENSP00000415038.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2224,
"cds_start": -4,
"cds_end": null,
"cds_length": 6675,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7805,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "WNK2",
"gene_hgnc_id": 14542,
"hgvs_c": "c.4732+3341T>G",
"hgvs_p": null,
"transcript": "ENST00000411624.5",
"protein_id": "ENSP00000414622.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1772,
"cds_start": -4,
"cds_end": null,
"cds_length": 5319,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6679,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 27,
"intron_rank_end": null,
"gene_symbol": "WNK2",
"gene_hgnc_id": 14542,
"hgvs_c": "c.6325+1259T>G",
"hgvs_p": null,
"transcript": "NM_001282394.3",
"protein_id": "NP_001269323.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2297,
"cds_start": -4,
"cds_end": null,
"cds_length": 6894,
"cdna_start": null,
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"cdna_length": 8324,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 25,
"intron_rank_end": null,
"gene_symbol": "WNK2",
"gene_hgnc_id": 14542,
"hgvs_c": "c.6214+1259T>G",
"hgvs_p": null,
"transcript": "ENST00000395477.6",
"protein_id": "ENSP00000378860.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 2217,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "WNK2",
"gene_hgnc_id": 14542,
"hgvs_c": "c.1678+2147T>G",
"hgvs_p": null,
"transcript": "ENST00000453718.2",
"protein_id": "ENSP00000413325.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 644,
"cds_start": -4,
"cds_end": null,
"cds_length": 1935,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1937,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 26,
"intron_rank_end": null,
"gene_symbol": "WNK2",
"gene_hgnc_id": 14542,
"hgvs_c": "c.6214+1259T>G",
"hgvs_p": null,
"transcript": "XM_005252137.4",
"protein_id": "XP_005252194.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2260,
"cds_start": -4,
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"cds_length": 6783,
"cdna_start": null,
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"mane_select": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "WNK2",
"gene_hgnc_id": 14542,
"hgvs_c": "c.6211+1259T>G",
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"transcript": "XM_017015045.2",
"protein_id": "XP_016870534.1",
"transcript_support_level": null,
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},
{
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"strand": true,
"consequences": [
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],
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"gene_symbol": "WNK2",
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"hgvs_c": "c.6160+1259T>G",
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},
{
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],
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],
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"gene_symbol": "WNK2",
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},
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],
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],
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