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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: X-124022370-CAAAAA-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=X&pos=124022370&ref=CAAAAA&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "X",
"pos": 124022370,
"ref": "CAAAAA",
"alt": "C",
"effect": "intron_variant",
"transcript": "NM_001042749.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001042750.2",
"protein_id": "NP_001036215.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1268,
"cds_start": null,
"cds_end": null,
"cds_length": 3807,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000371145.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001042750.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-160_-97-156delAAAAA",
"hgvs_p": null,
"transcript": "ENST00000371145.8",
"protein_id": "ENSP00000360187.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1268,
"cds_start": null,
"cds_end": null,
"cds_length": 3807,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001042750.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000371145.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-160_-97-156delAAAAA",
"hgvs_p": null,
"transcript": "ENST00000218089.13",
"protein_id": "ENSP00000218089.9",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1268,
"cds_start": null,
"cds_end": null,
"cds_length": 3807,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000218089.13"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-160_-97-156delAAAAA",
"hgvs_p": null,
"transcript": "ENST00000371144.7",
"protein_id": "ENSP00000360186.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1231,
"cds_start": null,
"cds_end": null,
"cds_length": 3696,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000371144.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-160_-97-156delAAAAA",
"hgvs_p": null,
"transcript": "ENST00000371157.7",
"protein_id": "ENSP00000360199.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1231,
"cds_start": null,
"cds_end": null,
"cds_length": 3696,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000371157.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-160_-97-156delAAAAA",
"hgvs_p": null,
"transcript": "ENST00000371160.5",
"protein_id": "ENSP00000360202.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1231,
"cds_start": null,
"cds_end": null,
"cds_length": 3696,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000371160.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001042749.2",
"protein_id": "NP_001036214.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1268,
"cds_start": null,
"cds_end": null,
"cds_length": 3807,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001042749.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001375366.1",
"protein_id": "NP_001362295.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1268,
"cds_start": null,
"cds_end": null,
"cds_length": 3807,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001375366.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001375367.1",
"protein_id": "NP_001362296.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1268,
"cds_start": null,
"cds_end": null,
"cds_length": 3807,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001375367.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001375368.1",
"protein_id": "NP_001362297.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1268,
"cds_start": null,
"cds_end": null,
"cds_length": 3807,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001375368.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001375369.1",
"protein_id": "NP_001362298.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1268,
"cds_start": null,
"cds_end": null,
"cds_length": 3807,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001375369.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001375370.1",
"protein_id": "NP_001362299.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1268,
"cds_start": null,
"cds_end": null,
"cds_length": 3807,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001375370.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001375371.1",
"protein_id": "NP_001362300.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1268,
"cds_start": null,
"cds_end": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001375371.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001375372.1",
"protein_id": "NP_001362301.1",
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "NM_001375372.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 36,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001441081.1",
"protein_id": "NP_001428010.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001441081.1"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 35,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001441082.1",
"protein_id": "NP_001428011.1",
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001441082.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-149_-97-145delAAAAA",
"hgvs_p": null,
"transcript": "NM_001441085.1",
"protein_id": "NP_001428014.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "NM_001441085.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-160_-97-156delAAAAA",
"hgvs_p": null,
"transcript": "ENST00000687852.1",
"protein_id": "ENSP00000509048.1",
"transcript_support_level": null,
"aa_start": null,
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"cdna_start": null,
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"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000687852.1"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-160_-97-156delAAAAA",
"hgvs_p": null,
"transcript": "ENST00000899964.1",
"protein_id": "ENSP00000570023.1",
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000899964.1"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-160_-97-156delAAAAA",
"hgvs_p": null,
"transcript": "ENST00000899967.1",
"protein_id": "ENSP00000570026.1",
"transcript_support_level": null,
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"biotype": "protein_coding",
"feature": "ENST00000899967.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-160_-97-156delAAAAA",
"hgvs_p": null,
"transcript": "ENST00000899970.1",
"protein_id": "ENSP00000570029.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1268,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000899970.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 36,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "STAG2",
"gene_hgnc_id": 11355,
"hgvs_c": "c.-97-160_-97-156delAAAAA",
"hgvs_p": null,
"transcript": "ENST00000899972.1",
"protein_id": "ENSP00000570031.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1268,
"cds_start": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000899972.1"
},
{
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