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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: X-1303972-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=X&pos=1303972&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "X",
"pos": 1303972,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "ENST00000381529.9",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "NM_172245.4",
"protein_id": "NP_758448.1",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 400,
"cds_start": 996,
"cds_end": null,
"cds_length": 1203,
"cdna_start": 1152,
"cdna_end": null,
"cdna_length": 1815,
"mane_select": "ENST00000381529.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "ENST00000381529.9",
"protein_id": "ENSP00000370940.3",
"transcript_support_level": 1,
"aa_start": 332,
"aa_end": null,
"aa_length": 400,
"cds_start": 996,
"cds_end": null,
"cds_length": 1203,
"cdna_start": 1152,
"cdna_end": null,
"cdna_length": 1815,
"mane_select": "NM_172245.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "ENST00000381509.8",
"protein_id": "ENSP00000370920.3",
"transcript_support_level": 1,
"aa_start": 332,
"aa_end": null,
"aa_length": 410,
"cds_start": 996,
"cds_end": null,
"cds_length": 1233,
"cdna_start": 1158,
"cdna_end": null,
"cdna_length": 1601,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "ENST00000381524.8",
"protein_id": "ENSP00000370935.3",
"transcript_support_level": 1,
"aa_start": 332,
"aa_end": null,
"aa_length": 400,
"cds_start": 996,
"cds_end": null,
"cds_length": 1203,
"cdna_start": 1182,
"cdna_end": null,
"cdna_length": 2291,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "ENST00000432318.8",
"protein_id": "ENSP00000416437.2",
"transcript_support_level": 1,
"aa_start": 332,
"aa_end": null,
"aa_length": 400,
"cds_start": 996,
"cds_end": null,
"cds_length": 1203,
"cdna_start": 1288,
"cdna_end": null,
"cdna_length": 1940,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "n.*2C>T",
"hgvs_p": null,
"transcript": "ENST00000486791.6",
"protein_id": "ENSP00000436825.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1671,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "n.*2C>T",
"hgvs_p": null,
"transcript": "ENST00000486791.6",
"protein_id": "ENSP00000436825.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1671,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.946+3346C>T",
"hgvs_p": null,
"transcript": "ENST00000355432.8",
"protein_id": "ENSP00000347606.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 377,
"cds_start": -4,
"cds_end": null,
"cds_length": 1134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1628,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.947-1474C>T",
"hgvs_p": null,
"transcript": "ENST00000381500.6",
"protein_id": "ENSP00000370911.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 333,
"cds_start": -4,
"cds_end": null,
"cds_length": 1002,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1283,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.647-1474C>T",
"hgvs_p": null,
"transcript": "ENST00000355805.7",
"protein_id": "ENSP00000348058.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 233,
"cds_start": -4,
"cds_end": null,
"cds_length": 702,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1410,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.1098C>T",
"hgvs_p": "p.Ile366Ile",
"transcript": "NM_001161530.2",
"protein_id": "NP_001155002.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 434,
"cds_start": 1098,
"cds_end": null,
"cds_length": 1305,
"cdna_start": 1254,
"cdna_end": null,
"cdna_length": 1917,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.1098C>T",
"hgvs_p": "p.Ile366Ile",
"transcript": "NM_001379153.1",
"protein_id": "NP_001366082.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 434,
"cds_start": 1098,
"cds_end": null,
"cds_length": 1305,
"cdna_start": 1190,
"cdna_end": null,
"cdna_length": 1853,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.1098C>T",
"hgvs_p": "p.Ile366Ile",
"transcript": "NM_001379154.1",
"protein_id": "NP_001366083.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 434,
"cds_start": 1098,
"cds_end": null,
"cds_length": 1305,
"cdna_start": 1278,
"cdna_end": null,
"cdna_length": 1941,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.1098C>T",
"hgvs_p": "p.Ile366Ile",
"transcript": "ENST00000498153.7",
"protein_id": "ENSP00000512483.1",
"transcript_support_level": 5,
"aa_start": 366,
"aa_end": null,
"aa_length": 434,
"cds_start": 1098,
"cds_end": null,
"cds_length": 1305,
"cdna_start": 1292,
"cdna_end": null,
"cdna_length": 1954,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "ENST00000718260.1",
"protein_id": "ENSP00000520700.1",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 431,
"cds_start": 996,
"cds_end": null,
"cds_length": 1296,
"cdna_start": 1172,
"cdna_end": null,
"cdna_length": 1679,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "NM_001161531.2",
"protein_id": "NP_001155003.1",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 410,
"cds_start": 996,
"cds_end": null,
"cds_length": 1233,
"cdna_start": 1176,
"cdna_end": null,
"cdna_length": 1619,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "NM_001379155.1",
"protein_id": "NP_001366084.1",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 410,
"cds_start": 996,
"cds_end": null,
"cds_length": 1233,
"cdna_start": 1152,
"cdna_end": null,
"cdna_length": 1595,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "NM_001161529.2",
"protein_id": "NP_001155001.1",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 400,
"cds_start": 996,
"cds_end": null,
"cds_length": 1203,
"cdna_start": 1304,
"cdna_end": null,
"cdna_length": 1967,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "NM_001379156.1",
"protein_id": "NP_001366085.1",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 400,
"cds_start": 996,
"cds_end": null,
"cds_length": 1203,
"cdna_start": 1088,
"cdna_end": null,
"cdna_length": 1751,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "NM_001379158.1",
"protein_id": "NP_001366087.1",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 400,
"cds_start": 996,
"cds_end": null,
"cds_length": 1203,
"cdna_start": 1142,
"cdna_end": null,
"cdna_length": 1805,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "NM_006140.6",
"protein_id": "NP_006131.2",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 400,
"cds_start": 996,
"cds_end": null,
"cds_length": 1203,
"cdna_start": 1176,
"cdna_end": null,
"cdna_length": 1839,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.996C>T",
"hgvs_p": "p.Ile332Ile",
"transcript": "NM_001379159.1",
"protein_id": "NP_001366088.1",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 397,
"cds_start": 996,
"cds_end": null,
"cds_length": 1194,
"cdna_start": 1152,
"cdna_end": null,
"cdna_length": 1579,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSF2RA",
"gene_hgnc_id": 2435,
"hgvs_c": "c.966C>T",
"hgvs_p": "p.Ile322Ile",
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}
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}