FAM186B
Basic information
Region (hg38): 12:49582885-49605639
Previous symbols: [ "C12orf25" ]
Links
Phenotypes
GenCC
Source:
ClinVar
This is a list of variants' phenotypes submitted to
Variants pathogenicity by type
Statistics on ClinVar variants can assist in determining whether a specific variant type in the FAM186B gene is commonly pathogenic or not.
In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.
Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.
Variant type | Pathogenic | Likely pathogenic | VUS | Likely benign | Benign | Sum |
---|---|---|---|---|---|---|
synonymous | 12 | |||||
missense | 59 | 14 | 15 | 88 | ||
nonsense | 3 | |||||
start loss | 0 | |||||
frameshift | 2 | |||||
inframe indel | 3 | |||||
splice donor/acceptor (+/-2bp) | 0 | |||||
splice region | 2 | 1 | 3 | |||
non coding | 5 | |||||
Total | 0 | 0 | 67 | 23 | 23 |
Variants in FAM186B
This is a list of pathogenic ClinVar variants found in the FAM186B region.
You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.
Position | Type | Phenotype | Significance | ClinVar |
---|---|---|---|---|
12-49587627-C-T | not specified | Uncertain significance (Apr 24, 2023) | ||
12-49587661-G-A | not specified | Likely benign (Jul 16, 2021) | ||
12-49587690-A-G | not specified | Uncertain significance (Jan 09, 2023) | ||
12-49587695-G-A | Benign (Jan 29, 2024) | |||
12-49587731-C-G | Benign (Dec 07, 2023) | |||
12-49587939-T-C | Benign (May 12, 2021) | |||
12-49588449-C-T | Uncertain significance (Nov 23, 2021) | |||
12-49588455-G-A | Benign (Oct 30, 2023) | |||
12-49588459-C-T | Likely benign (Dec 11, 2023) | |||
12-49588460-A-G | Likely benign (Jul 19, 2022) | |||
12-49588481-C-T | Benign (Jan 24, 2024) | |||
12-49588535-C-T | Likely benign (Dec 07, 2023) | |||
12-49588536-G-A | Benign (Dec 11, 2023) | |||
12-49588577-G-A | not specified | Uncertain significance (Jul 12, 2022) | ||
12-49588614-C-A | Uncertain significance (Aug 09, 2022) | |||
12-49598742-G-A | Likely benign (Apr 08, 2022) | |||
12-49598749-G-A | Uncertain significance (May 23, 2023) | |||
12-49598760-G-C | not specified | Uncertain significance (Nov 09, 2023) | ||
12-49598793-G-A | Uncertain significance (May 13, 2022) | |||
12-49598799-TCTC-T | Uncertain significance (Oct 13, 2022) | |||
12-49598825-G-A | not specified | Uncertain significance (Feb 06, 2023) | ||
12-49598900-G-A | not specified | Uncertain significance (Feb 27, 2023) | ||
12-49598909-G-A | Benign (Jan 24, 2024) | |||
12-49598939-G-A | Benign (Jan 15, 2024) | |||
12-49599389-T-C | Benign (May 15, 2021) |
GnomAD
Source:
Gene | Type | Bio Type | Transcript | Coding Exons | Length |
---|---|---|---|---|---|
FAM186B | protein_coding | protein_coding | ENST00000257894 | 7 | 22755 |
pLI Probability LOF Intolerant | pRec Probability LOF Recessive | Individuals with no LOFs | Individuals with Homozygous LOFs | Individuals with Heterozygous LOFs | Defined | p |
---|---|---|---|---|---|---|
5.51e-24 | 0.00133 | 125702 | 0 | 46 | 125748 | 0.000183 |
Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible in Transcript | |
---|---|---|---|---|---|---|
Missense | 0.796 | 449 | 499 | 0.900 | 0.0000274 | 5863 |
Missense in Polyphen | 98 | 123.36 | 0.79442 | 1736 | ||
Synonymous | 2.84 | 146 | 197 | 0.742 | 0.0000105 | 1724 |
Loss of Function | 0.325 | 37 | 39.2 | 0.944 | 0.00000201 | 435 |
LoF frequencies by population
Ethnicity | Sum of pLOFs | p |
---|---|---|
African & African-American | 0.000308 | 0.000308 |
Ashkenazi Jewish | 0.00 | 0.00 |
East Asian | 0.00114 | 0.00114 |
Finnish | 0.00 | 0.00 |
European (Non-Finnish) | 0.000129 | 0.000123 |
Middle Eastern | 0.00114 | 0.00114 |
South Asian | 0.000215 | 0.000196 |
Other | 0.00 | 0.00 |
dbNSFP
Source:
Intolerance Scores
- loftool
- 0.989
- rvis_EVS
- 1.41
- rvis_percentile_EVS
- 94.8
Haploinsufficiency Scores
- pHI
- 0.0639
- hipred
- N
- hipred_score
- 0.112
- ghis
- 0.408
Essentials
- essential_gene_CRISPR
- N
- essential_gene_CRISPR2
- S
- essential_gene_gene_trap
- N
- gene_indispensability_pred
- N
- gene_indispensability_score
- 0.0153
Gene Damage Prediction
All | Recessive | Dominant | |
---|---|---|---|
Mendelian | Medium | Medium | Medium |
Primary Immunodeficiency | Medium | Medium | Medium |
Cancer | Medium | Medium | Medium |
Mouse Genome Informatics
- Gene name
- Fam186b
- Phenotype
- homeostasis/metabolism phenotype;
Gene ontology
- Biological process
- Cellular component
- protein-containing complex
- Molecular function