FBXO33

F-box protein 33, the group of F-boxes other

Basic information

Region (hg38): 14:39397684-39432466

Links

ENSG00000165355 ∙ NCBI:254170 ∙ OMIM:609103 ∙ HGNC:19833 ∙ Uniprot:Q7Z6M2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the FBXO33 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the FBXO33 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			49	2	1	52
nonsense						0
start loss						0
frameshift						0
inframe indel					1	1
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	49	2	2

Variants in FBXO33

This is a list of pathogenic ClinVar variants found in the FBXO33 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
14-39399559-C-T		not specified	Uncertain significance (Sep 02, 2024)
14-39399580-C-T		not specified	Uncertain significance (Oct 14, 2023)
14-39399590-C-T		not specified	Uncertain significance (May 14, 2024)
14-39399596-C-G		not specified	Uncertain significance (Feb 12, 2025)
14-39399634-A-G		not specified	Uncertain significance (Aug 15, 2023)
14-39399635-C-A		not specified	Uncertain significance (Jul 05, 2022)
14-39399643-A-G		not specified	Uncertain significance (Jun 29, 2023)
14-39399647-G-C		not specified	Uncertain significance (Dec 09, 2024)
14-39399660-A-T		not specified	Uncertain significance (Jul 12, 2023)
14-39399676-G-C		not specified	Uncertain significance (Jan 10, 2023)
14-39399687-T-G		not specified	Uncertain significance (May 15, 2024)
14-39399688-T-C		not specified	Uncertain significance (Nov 12, 2024)
14-39399716-C-T		not specified	Uncertain significance (Aug 30, 2022)
14-39399766-T-C		not specified	Uncertain significance (Nov 07, 2022)
14-39401263-A-G		not specified	Uncertain significance (Jan 02, 2024)
14-39401291-T-G		not specified	Uncertain significance (Apr 01, 2024)
14-39401314-T-G		not specified	Uncertain significance (Jan 05, 2022)
14-39401365-T-C		not specified	Uncertain significance (Apr 17, 2024)
14-39401399-A-T		not specified	Uncertain significance (May 13, 2024)
14-39401430-C-T		not specified	Uncertain significance (Aug 17, 2021)
14-39401460-C-A		not specified	Uncertain significance (Nov 22, 2023)
14-39401478-C-T		not specified	Uncertain significance (May 30, 2024)
14-39401529-T-G		not specified	Uncertain significance (Nov 18, 2022)
14-39401544-T-C		not specified	Likely benign (Nov 13, 2023)
14-39401565-C-T		not specified	Uncertain significance (Nov 23, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
FBXO33	protein_coding	protein_coding	ENST00000298097	4	34832

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.994	0.00583	125732	0	5	125737	0.0000199

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.891	237	279	0.850	0.0000134	3555
Missense in Polyphen		33	64.675	0.51024		789
Synonymous	-1.45	134	114	1.17	0.00000546	1182
Loss of Function	3.90	1	19.7	0.0508	0.00000121	204

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.0000995	0.0000992
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000369	0.0000352
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Substrate recognition component of a SCF (SKP1-CUL1-F- box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Recognizes YBX1 (By similarity). {ECO:0000250}.

Recessive Scores

• pRec: 0.0995

Intolerance Scores

• loftool: 0.330
• rvis_EVS: -0.34
• rvis_percentile_EVS: 30.37

Haploinsufficiency Scores

• pHI: 0.569
• hipred: Y
• hipred_score: 0.662
• ghis: 0.554

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.745

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Fbxo33
• Phenotype: growth/size/body region phenotype; behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan)

Gene ontology

• Biological process: protein ubiquitination;SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
• Cellular component: SCF ubiquitin ligase complex
• Molecular function: protein binding