GATA3-AS1

GATA3 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 10:8016633-8057043

Links

ENSG00000197308 ∙ NCBI:399717 ∙ ∙ HGNC:33786 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the GATA3-AS1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the GATA3-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in GATA3-AS1

This is a list of pathogenic ClinVar variants found in the GATA3-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
10-8054700-G-T		Hypoparathyroidism, deafness, renal disease syndrome	Uncertain significance (Jan 12, 2018)
10-8054743-T-TAA		Hypoparathyroidism, deafness, renal disease syndrome	Uncertain significance (Jun 14, 2016)
10-8054766-G-C		Hypoparathyroidism, deafness, renal disease syndrome	Uncertain significance (Jan 13, 2018)
10-8054848-C-T		Hypoparathyroidism, deafness, renal disease syndrome	Uncertain significance (Jan 12, 2018)
10-8054906-CT-C		Hypoparathyroidism, deafness, renal disease syndrome	Benign (Jun 14, 2016)
10-8054906-C-CT		Hypoparathyroidism, deafness, renal disease syndrome	Uncertain significance (Jun 14, 2016)
10-8055276-C-T		Hypoparathyroidism, deafness, renal disease syndrome	Uncertain significance (Jan 13, 2018)
10-8055297-G-A		Hypoparathyroidism, deafness, renal disease syndrome	Benign/Likely benign (Dec 22, 2018)
10-8055305-C-T		Hypoparathyroidism, deafness, renal disease syndrome	Benign (Jan 13, 2018)
10-8055369-G-A		Hypoparathyroidism, deafness, renal disease syndrome	Uncertain significance (Jan 13, 2018)
10-8055392-G-T		Hypoparathyroidism, deafness, renal disease syndrome	Benign (Jan 13, 2018)
10-8055405-G-A		Hypoparathyroidism, deafness, renal disease syndrome	Benign (Mar 31, 2019)
10-8055508-A-G		Hypoparathyroidism, deafness, renal disease syndrome	Uncertain significance (Jan 12, 2018)
10-8055561-G-T		Hypoparathyroidism, deafness, renal disease syndrome	Benign (Jan 13, 2018)
10-8055576-C-T		Hypoparathyroidism, deafness, renal disease syndrome	Uncertain significance (Jan 12, 2018)
10-8055587-G-A		Hypoparathyroidism, deafness, renal disease syndrome	Benign (Jan 13, 2018)
10-8055596-C-T		Hypoparathyroidism, deafness, renal disease syndrome	Benign (Jun 21, 2018)
10-8055598-C-T		Hypoparathyroidism, deafness, renal disease syndrome	Benign (Jun 16, 2018)
10-8055607-C-T		Hypoparathyroidism, deafness, renal disease syndrome • not specified	Benign (Jan 13, 2018)
10-8055608-G-T		Hypoparathyroidism, deafness, renal disease syndrome	Benign/Likely benign (Jun 16, 2018)
10-8055616-G-A		Hypoparathyroidism, deafness, renal disease syndrome	Uncertain significance (Jan 12, 2018)
10-8055663-T-C			Uncertain significance (Jun 24, 2024)
10-8055665-A-G			Uncertain significance (Oct 07, 2022)
10-8055673-C-T			Likely benign (Dec 25, 2021)
10-8055683-T-G			Uncertain significance (Sep 18, 2020)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP